Strain Fitness in Pseudomonas simiae WCS417 around PS417_05330

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X
1,182,907	-		PS417_05320	0.80	-0.8
1,182,928	+		PS417_05320	0.84	-0.5
1,182,929	-		PS417_05320	0.85	+0.2
1,182,929	-		PS417_05320	0.85	-0.2
1,182,932	+		PS417_05320	0.85	-1.2
1,182,932	+		PS417_05320	0.85	-0.7
1,182,932	+		PS417_05320	0.85	-1.3
1,182,933	-		PS417_05320	0.85	-0.3
1,182,933	-		PS417_05320	0.85	-0.0
1,183,001	-				+0.1
1,183,026	+				+0.0
1,183,064	+				-1.8
1,183,064	+				+0.2
1,183,064	+				-2.7
1,183,065	-				+0.1
1,183,073	-				-0.6
1,183,116	-		PS417_05325	0.10	-0.0
1,183,263	-		PS417_05325	0.36	+0.8
1,183,448	+		PS417_05325	0.69	-0.0
1,183,448	+		PS417_05325	0.69	-0.7
1,183,449	-		PS417_05325	0.70	-0.1
1,183,611	+				-2.2
1,183,612	-				+0.5
1,183,740	+				-1.3
1,183,741	-				-0.4
1,183,743	+				-0.9
1,183,809	+				-1.2
1,183,826	-				-0.4
1,183,826	-				-0.2
1,183,857	+				+2.8
1,183,977	+		PS417_05330	0.10	+0.3
1,183,977	+		PS417_05330	0.10	+0.8
1,183,977	+		PS417_05330	0.10	+0.0
1,183,978	-		PS417_05330	0.10	+1.0
1,183,978	-		PS417_05330	0.10	+0.2
1,183,978	-		PS417_05330	0.10	-0.2
1,183,978	-		PS417_05330	0.10	-0.1
1,183,978	-		PS417_05330	0.10	-0.2
1,184,083	+		PS417_05330	0.14	+0.8
1,184,158	+		PS417_05330	0.17	-0.1
1,184,159	-		PS417_05330	0.17	+0.1
1,184,159	-		PS417_05330	0.17	+0.2
1,184,159	-		PS417_05330	0.17	+0.0
1,184,208	+		PS417_05330	0.19	+1.4
1,184,338	+		PS417_05330	0.25	+0.3
1,184,338	+		PS417_05330	0.25	-0.7
1,184,338	+		PS417_05330	0.25	-1.1
1,184,339	-		PS417_05330	0.25	+0.2
1,184,339	-		PS417_05330	0.25	-0.1
1,184,378	+		PS417_05330	0.26	-0.1
1,184,392	+		PS417_05330	0.27	+0.5
1,184,399	-		PS417_05330	0.27	-1.3
1,184,427	+		PS417_05330	0.28	-1.0
1,184,554	+		PS417_05330	0.33	+0.2
1,184,716	+		PS417_05330	0.40	+0.7
1,184,716	+		PS417_05330	0.40	-0.7
1,184,822	-		PS417_05330	0.44	+0.6
1,184,822	-		PS417_05330	0.44	+0.3
1,184,832	+		PS417_05330	0.44	+0.9
1,184,832	+		PS417_05330	0.44	-0.5
1,184,848	+		PS417_05330	0.45	-2.1
1,184,849	-		PS417_05330	0.45	+1.2
1,184,975	-		PS417_05330	0.50	+0.5
1,185,061	+		PS417_05330	0.53	-0.6
1,185,061	+		PS417_05330	0.53	+2.0
1,185,167	-		PS417_05330	0.57	-0.3
1,185,169	-		PS417_05330	0.57	+1.3
1,185,238	+		PS417_05330	0.60	+0.2
1,185,238	+		PS417_05330	0.60	-0.3
1,185,239	-		PS417_05330	0.60	+0.0
1,185,239	-				-0.6
1,185,239	-		PS417_05330	0.60	+0.7
1,185,286	+				-0.4
1,185,334	+		PS417_05330	0.64	-0.4
1,185,355	+		PS417_05330	0.65	-0.8
1,185,356	-		PS417_05330	0.65	-0.3
1,185,356	-		PS417_05330	0.65	-1.7
1,185,356	-		PS417_05330	0.65	+0.0
1,185,486	+		PS417_05330	0.70	+0.7
1,185,487	-		PS417_05330	0.70	-0.5
1,185,487	-		PS417_05330	0.70	+0.1
1,185,489	+		PS417_05330	0.70	+0.4
1,185,489	+		PS417_05330	0.70	+1.4
1,185,489	+		PS417_05330	0.70	+0.6
1,185,489	+		PS417_05330	0.70	+2.4
1,185,490	-		PS417_05330	0.70	-0.3
1,185,490	-		PS417_05330	0.70	+0.2
1,185,490	-		PS417_05330	0.70	+0.4
1,185,490	-		PS417_05330	0.70	-0.3
1,185,490	-		PS417_05330	0.70	-0.2
1,185,529	+		PS417_05330	0.72	-0.2
1,185,661	-		PS417_05330	0.77	+0.2
1,186,033	+				-1.7
1,186,466	-		PS417_05335	0.30	+0.3
1,186,567	-		PS417_05335	0.43	+1.3
1,186,569	+		PS417_05335	0.43	-0.3
1,186,569	+		PS417_05335	0.43	-0.5
1,186,570	-		PS417_05335	0.43	-0.5
1,186,644	-		PS417_05335	0.53	-1.1
1,186,751	+		PS417_05335	0.67	-0.3
1,186,758	-		PS417_05335	0.68	+0.7
1,186,764	+		PS417_05335	0.69	+0.7
1,186,764	+				-0.9
1,186,765	-		PS417_05335	0.69	-0.5
1,186,765	-		PS417_05335	0.69	-1.3
1,186,765	-		PS417_05335	0.69	+0.2
1,186,765	-		PS417_05335	0.69	-0.9
1,186,767	+		PS417_05335	0.69	-0.6
1,186,767	+		PS417_05335	0.69	-1.8
1,186,768	-		PS417_05335	0.69	+0.8
1,186,768	-		PS417_05335	0.69	-0.4
1,186,768	-		PS417_05335	0.69	-0.3
1,186,879	+		PS417_05335	0.84	-0.3
1,186,880	-		PS417_05335	0.84	-1.1
1,186,906	-		PS417_05335	0.88	+0.2
1,186,956	-				+2.4
1,186,999	-				-1.5
1,186,999	-				+0.1