Experiment: Vogels_fungal_media; pH 5.5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_04405 and PS417_04410 are separated by 25 nucleotides PS417_04410 and PS417_04415 are separated by 8 nucleotides PS417_04415 and PS417_04420 are separated by 128 nucleotides PS417_04420 and PS417_04425 are separated by 3 nucleotides
PS417_04405: PS417_04405 - UDP-N-acetylglucosamine 1-carboxyvinyltransferase, at 979,775 to 981,040
_04405
PS417_04410: PS417_04410 - hypothetical protein, at 981,066 to 981,245
_04410
PS417_04415: PS417_04415 - ATP phosphoribosyltransferase (EC 2.4.2.17) <small>(from data)</small>, at 981,254 to 981,889
_04415
PS417_04420: PS417_04420 - histidinol dehydrogenase, at 982,018 to 983,340
_04420
PS417_04425: PS417_04425 - histidinol-phosphate aminotransferase, at 983,344 to 984,396
_04425
Position (kb) 982
983
984 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 981.056 kb on - strand at 981.056 kb on - strand at 981.149 kb on + strand, within PS417_04410 at 981.150 kb on - strand, within PS417_04410 at 981.182 kb on - strand, within PS417_04410 at 981.227 kb on + strand, within PS417_04410 at 981.425 kb on + strand, within PS417_04415 at 981.425 kb on + strand, within PS417_04415 at 981.464 kb on - strand, within PS417_04415 at 981.483 kb on - strand, within PS417_04415 at 981.500 kb on + strand, within PS417_04415 at 981.501 kb on - strand, within PS417_04415 at 981.501 kb on - strand, within PS417_04415 at 981.501 kb on - strand, within PS417_04415 at 981.623 kb on + strand, within PS417_04415 at 981.624 kb on - strand, within PS417_04415 at 981.650 kb on - strand, within PS417_04415 at 981.972 kb on - strand at 982.002 kb on + strand at 982.327 kb on + strand, within PS417_04420 at 982.360 kb on + strand, within PS417_04420 at 982.360 kb on + strand, within PS417_04420 at 982.423 kb on + strand, within PS417_04420 at 982.423 kb on + strand, within PS417_04420 at 982.628 kb on - strand, within PS417_04420 at 982.681 kb on + strand, within PS417_04420 at 982.681 kb on + strand, within PS417_04420 at 982.681 kb on + strand, within PS417_04420 at 982.682 kb on - strand, within PS417_04420 at 982.682 kb on - strand, within PS417_04420 at 982.893 kb on + strand, within PS417_04420 at 982.893 kb on + strand, within PS417_04420 at 982.893 kb on + strand, within PS417_04420 at 982.894 kb on - strand, within PS417_04420 at 982.894 kb on - strand at 982.894 kb on - strand, within PS417_04420 at 983.120 kb on - strand, within PS417_04420 at 983.188 kb on + strand, within PS417_04420 at 983.188 kb on + strand, within PS417_04420 at 983.189 kb on - strand, within PS417_04420 at 983.189 kb on - strand, within PS417_04420 at 983.189 kb on - strand, within PS417_04420 at 983.350 kb on - strand at 983.386 kb on + strand at 983.386 kb on + strand at 983.386 kb on + strand at 983.386 kb on + strand at 983.386 kb on + strand at 983.387 kb on - strand at 983.557 kb on + strand, within PS417_04425 at 983.558 kb on - strand, within PS417_04425 at 983.558 kb on - strand, within PS417_04425 at 983.558 kb on - strand, within PS417_04425 at 983.675 kb on - strand, within PS417_04425 at 983.823 kb on - strand, within PS417_04425 at 983.823 kb on - strand, within PS417_04425 at 983.894 kb on - strand, within PS417_04425 at 983.894 kb on - strand, within PS417_04425 at 983.894 kb on - strand, within PS417_04425 at 983.999 kb on + strand at 984.000 kb on - strand, within PS417_04425 at 984.124 kb on + strand, within PS417_04425 at 984.125 kb on - strand, within PS417_04425 at 984.163 kb on - strand, within PS417_04425
Per-strain Table
Position Strand Gene LocusTag Fraction Vogels_fungal_media; pH 5.5 remove 981,056 - -0.4 981,056 - -3.4 981,149 + PS417_04410 0.46 -0.8 981,150 - PS417_04410 0.47 -2.2 981,182 - PS417_04410 0.64 -0.6 981,227 + PS417_04410 0.89 +1.5 981,425 + PS417_04415 0.27 -4.0 981,425 + PS417_04415 0.27 -4.0 981,464 - PS417_04415 0.33 -2.1 981,483 - PS417_04415 0.36 -2.0 981,500 + PS417_04415 0.39 -2.4 981,501 - PS417_04415 0.39 -1.3 981,501 - PS417_04415 0.39 -2.1 981,501 - PS417_04415 0.39 -1.8 981,623 + PS417_04415 0.58 -4.0 981,624 - PS417_04415 0.58 -3.1 981,650 - PS417_04415 0.62 -5.6 981,972 - -1.9 982,002 + +0.5 982,327 + PS417_04420 0.23 -4.7 982,360 + PS417_04420 0.26 -2.0 982,360 + PS417_04420 0.26 -1.0 982,423 + PS417_04420 0.31 -0.4 982,423 + PS417_04420 0.31 -3.5 982,628 - PS417_04420 0.46 -3.2 982,681 + PS417_04420 0.50 -1.4 982,681 + PS417_04420 0.50 -2.6 982,681 + PS417_04420 0.50 -3.6 982,682 - PS417_04420 0.50 -2.0 982,682 - PS417_04420 0.50 -2.5 982,893 + PS417_04420 0.66 -2.3 982,893 + PS417_04420 0.66 -1.5 982,893 + PS417_04420 0.66 -5.1 982,894 - PS417_04420 0.66 -4.2 982,894 - -0.8 982,894 - PS417_04420 0.66 -2.1 983,120 - PS417_04420 0.83 -4.3 983,188 + PS417_04420 0.88 -4.0 983,188 + PS417_04420 0.88 -3.1 983,189 - PS417_04420 0.89 -3.1 983,189 - PS417_04420 0.89 -1.1 983,189 - PS417_04420 0.89 -3.4 983,350 - -1.0 983,386 + +1.4 983,386 + +0.2 983,386 + -1.0 983,386 + +0.5 983,386 + -3.5 983,387 - -0.1 983,557 + PS417_04425 0.20 -0.2 983,558 - PS417_04425 0.20 +0.1 983,558 - PS417_04425 0.20 -0.6 983,558 - PS417_04425 0.20 -0.1 983,675 - PS417_04425 0.31 -0.2 983,823 - PS417_04425 0.45 +1.7 983,823 - PS417_04425 0.45 +0.4 983,894 - PS417_04425 0.52 -0.5 983,894 - PS417_04425 0.52 +1.0 983,894 - PS417_04425 0.52 -0.1 983,999 + -0.1 984,000 - PS417_04425 0.62 +0.8 984,124 + PS417_04425 0.74 +1.3 984,125 - PS417_04425 0.74 -0.1 984,163 - PS417_04425 0.78 +0.5
Or see this region's nucleotide sequence