Experiment: Vogels_fungal_media; pH 5.5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_04380 and PS417_04385 overlap by 1 nucleotides PS417_04385 and PS417_04390 are separated by 11 nucleotides PS417_04390 and PS417_04395 overlap by 4 nucleotides PS417_04395 and PS417_04400 are separated by 114 nucleotides PS417_04400 and PS417_04405 are separated by 23 nucleotides
PS417_04380: PS417_04380 - ABC transporter permease, at 977,169 to 977,966
_04380
PS417_04385: PS417_04385 - organic solvent ABC transporter substrate-binding protein, at 977,966 to 978,433
_04385
PS417_04390: PS417_04390 - toluene tolerance protein, at 978,445 to 979,095
_04390
PS417_04395: PS417_04395 - anti-sigma factor antagonist, at 979,092 to 979,397
_04395
PS417_04400: PS417_04400 - BolA family transcriptional regulator, at 979,512 to 979,751
_04400
PS417_04405: PS417_04405 - UDP-N-acetylglucosamine 1-carboxyvinyltransferase, at 979,775 to 981,040
_04405
Position (kb) 978
979
980 Strain fitness (log2 ratio) -1
0
1 at 977.605 kb on - strand, within PS417_04380 at 977.902 kb on - strand at 978.079 kb on + strand, within PS417_04385 at 978.085 kb on + strand, within PS417_04385 at 978.098 kb on + strand, within PS417_04385 at 978.134 kb on - strand, within PS417_04385 at 978.234 kb on + strand, within PS417_04385 at 978.239 kb on - strand, within PS417_04385 at 978.239 kb on - strand, within PS417_04385 at 978.265 kb on + strand, within PS417_04385 at 978.395 kb on - strand at 978.409 kb on + strand at 978.418 kb on + strand at 978.757 kb on + strand, within PS417_04390 at 978.778 kb on + strand, within PS417_04390 at 978.779 kb on - strand, within PS417_04390 at 978.886 kb on + strand, within PS417_04390 at 978.887 kb on - strand, within PS417_04390 at 979.396 kb on - strand at 979.398 kb on + strand at 979.399 kb on - strand at 979.405 kb on + strand at 979.406 kb on - strand at 979.406 kb on - strand at 979.409 kb on - strand at 979.436 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Vogels_fungal_media; pH 5.5 remove 977,605 - PS417_04380 0.55 -0.1 977,902 - -1.4 978,079 + PS417_04385 0.24 -0.9 978,085 + PS417_04385 0.25 -1.1 978,098 + PS417_04385 0.28 -1.4 978,134 - PS417_04385 0.36 -0.7 978,234 + PS417_04385 0.57 +0.4 978,239 - PS417_04385 0.58 +0.8 978,239 - PS417_04385 0.58 -1.6 978,265 + PS417_04385 0.64 -0.1 978,395 - +0.9 978,409 + -0.5 978,418 + -1.0 978,757 + PS417_04390 0.48 -1.4 978,778 + PS417_04390 0.51 +0.2 978,779 - PS417_04390 0.51 -0.3 978,886 + PS417_04390 0.68 -1.5 978,887 - PS417_04390 0.68 -1.0 979,396 - +0.5 979,398 + -1.5 979,399 - -0.4 979,405 + -0.6 979,406 - -0.5 979,406 - +0.7 979,409 - +0.4 979,436 - -0.9
Or see this region's nucleotide sequence