Strain Fitness in Pseudomonas simiae WCS417 around PS417_04275

Experiment: Vogels_fungal_media; pH 5.5

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_04270 and PS417_04275 are separated by 76 nucleotidesPS417_04275 and PS417_04280 are separated by 48 nucleotidesPS417_04280 and PS417_04285 are separated by 16 nucleotides PS417_04270: PS417_04270 - ribonuclease G, at 955,325 to 956,782 _04270 PS417_04275: PS417_04275 - hypothetical protein, at 956,859 to 960,674 _04275 PS417_04280: PS417_04280 - carbon-nitrogen hydrolase, at 960,723 to 961,571 _04280 PS417_04285: PS417_04285 - protease TldD, at 961,588 to 963,030 _04285 Position (kb) 956 957 958 959 960 961Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 955.940 kb on + strandat 955.966 kb on + strand, within PS417_04270at 956.120 kb on + strand, within PS417_04270at 956.391 kb on + strand, within PS417_04270at 956.391 kb on + strand, within PS417_04270at 956.392 kb on - strand, within PS417_04270at 956.392 kb on - strand, within PS417_04270at 956.511 kb on + strand, within PS417_04270at 956.630 kb on + strand, within PS417_04270at 956.630 kb on + strand, within PS417_04270at 956.747 kb on + strandat 956.747 kb on + strandat 956.802 kb on + strandat 956.943 kb on + strandat 956.943 kb on + strandat 956.943 kb on + strandat 956.943 kb on + strandat 956.944 kb on - strandat 956.944 kb on - strandat 956.944 kb on - strandat 957.156 kb on - strandat 957.396 kb on + strand, within PS417_04275at 957.396 kb on + strand, within PS417_04275at 957.396 kb on + strand, within PS417_04275at 957.396 kb on + strand, within PS417_04275at 957.396 kb on + strand, within PS417_04275at 957.397 kb on - strandat 957.397 kb on - strand, within PS417_04275at 957.397 kb on - strand, within PS417_04275at 957.397 kb on - strand, within PS417_04275at 957.397 kb on - strand, within PS417_04275at 957.498 kb on - strandat 957.537 kb on + strand, within PS417_04275at 957.705 kb on + strand, within PS417_04275at 957.984 kb on - strand, within PS417_04275at 958.034 kb on + strand, within PS417_04275at 958.092 kb on + strand, within PS417_04275at 958.092 kb on + strand, within PS417_04275at 958.092 kb on + strand, within PS417_04275at 958.092 kb on + strand, within PS417_04275at 958.092 kb on + strand, within PS417_04275at 958.092 kb on + strand, within PS417_04275at 958.092 kb on + strand, within PS417_04275at 958.093 kb on - strand, within PS417_04275at 958.093 kb on - strand, within PS417_04275at 958.093 kb on - strandat 958.093 kb on - strand, within PS417_04275at 958.093 kb on - strand, within PS417_04275at 958.093 kb on - strand, within PS417_04275at 958.093 kb on - strand, within PS417_04275at 958.159 kb on + strand, within PS417_04275at 958.160 kb on - strand, within PS417_04275at 958.160 kb on - strand, within PS417_04275at 958.221 kb on + strand, within PS417_04275at 958.287 kb on + strand, within PS417_04275at 958.287 kb on + strand, within PS417_04275at 958.287 kb on + strand, within PS417_04275at 958.288 kb on - strand, within PS417_04275at 958.368 kb on + strand, within PS417_04275at 958.369 kb on - strand, within PS417_04275at 958.423 kb on - strand, within PS417_04275at 958.423 kb on - strand, within PS417_04275at 958.553 kb on + strand, within PS417_04275at 958.553 kb on + strand, within PS417_04275at 958.554 kb on - strand, within PS417_04275at 958.554 kb on - strand, within PS417_04275at 958.554 kb on - strand, within PS417_04275at 958.710 kb on + strand, within PS417_04275at 958.887 kb on - strand, within PS417_04275at 958.887 kb on - strand, within PS417_04275at 958.888 kb on + strand, within PS417_04275at 958.889 kb on - strand, within PS417_04275at 958.889 kb on - strand, within PS417_04275at 958.889 kb on - strand, within PS417_04275at 959.102 kb on + strand, within PS417_04275at 959.539 kb on + strand, within PS417_04275at 959.608 kb on + strand, within PS417_04275at 959.609 kb on - strand, within PS417_04275at 959.766 kb on + strand, within PS417_04275at 959.767 kb on - strand, within PS417_04275at 959.767 kb on - strand, within PS417_04275at 959.767 kb on - strand, within PS417_04275at 960.036 kb on + strand, within PS417_04275at 960.036 kb on + strand, within PS417_04275at 960.159 kb on + strand, within PS417_04275at 960.159 kb on + strand, within PS417_04275at 960.160 kb on - strand, within PS417_04275at 960.160 kb on - strand, within PS417_04275at 960.160 kb on - strand, within PS417_04275at 960.334 kb on - strandat 960.334 kb on - strandat 960.497 kb on + strandat 960.498 kb on - strandat 960.606 kb on + strandat 960.606 kb on + strandat 960.606 kb on + strandat 960.606 kb on + strandat 960.606 kb on + strandat 960.606 kb on + strandat 960.607 kb on - strandat 960.607 kb on - strandat 960.607 kb on - strandat 960.607 kb on - strandat 960.607 kb on - strandat 960.687 kb on + strandat 960.687 kb on + strandat 960.687 kb on + strandat 960.687 kb on + strandat 960.688 kb on - strandat 960.833 kb on - strand, within PS417_04280at 960.953 kb on - strand, within PS417_04280at 960.953 kb on - strand, within PS417_04280at 961.129 kb on - strand, within PS417_04280at 961.195 kb on - strand, within PS417_04280at 961.195 kb on - strand, within PS417_04280at 961.339 kb on - strand, within PS417_04280at 961.339 kb on - strand, within PS417_04280at 961.390 kb on - strand, within PS417_04280at 961.575 kb on + strandat 961.583 kb on + strandat 961.583 kb on + strandat 961.583 kb on + strandat 961.583 kb on + strandat 961.583 kb on + strandat 961.584 kb on - strandat 961.584 kb on - strandat 961.584 kb on - strandat 961.587 kb on + strandat 961.588 kb on - strandat 961.588 kb on - strandat 961.588 kb on - strandat 961.588 kb on - strandat 961.588 kb on - strandat 961.588 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Vogels_fungal_media; pH 5.5
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955,940 + +0.7
955,966 + PS417_04270 0.44 +1.2
956,120 + PS417_04270 0.55 -0.7
956,391 + PS417_04270 0.73 +0.7
956,391 + PS417_04270 0.73 +1.2
956,392 - PS417_04270 0.73 +0.3
956,392 - PS417_04270 0.73 -1.1
956,511 + PS417_04270 0.81 +0.1
956,630 + PS417_04270 0.90 +0.2
956,630 + PS417_04270 0.90 -0.3
956,747 + +0.8
956,747 + +0.0
956,802 + +1.8
956,943 + -1.1
956,943 + -1.2
956,943 + -1.5
956,943 + -0.9
956,944 - -1.3
956,944 - -1.5
956,944 - -1.7
957,156 - +2.2
957,396 + PS417_04275 0.14 -2.1
957,396 + PS417_04275 0.14 -1.1
957,396 + PS417_04275 0.14 -2.3
957,396 + PS417_04275 0.14 -1.7
957,396 + PS417_04275 0.14 -2.3
957,397 - -1.7
957,397 - PS417_04275 0.14 -0.2
957,397 - PS417_04275 0.14 +0.4
957,397 - PS417_04275 0.14 -1.6
957,397 - PS417_04275 0.14 -1.3
957,498 - -1.2
957,537 + PS417_04275 0.18 -0.4
957,705 + PS417_04275 0.22 -0.8
957,984 - PS417_04275 0.29 -0.9
958,034 + PS417_04275 0.31 -1.2
958,092 + PS417_04275 0.32 -1.7
958,092 + PS417_04275 0.32 -1.9
958,092 + PS417_04275 0.32 -1.2
958,092 + PS417_04275 0.32 -0.5
958,092 + PS417_04275 0.32 -1.5
958,092 + PS417_04275 0.32 -0.7
958,092 + PS417_04275 0.32 -1.2
958,093 - PS417_04275 0.32 -0.6
958,093 - PS417_04275 0.32 -1.7
958,093 - +0.9
958,093 - PS417_04275 0.32 -1.4
958,093 - PS417_04275 0.32 -0.9
958,093 - PS417_04275 0.32 -1.4
958,093 - PS417_04275 0.32 -1.6
958,159 + PS417_04275 0.34 -1.6
958,160 - PS417_04275 0.34 -2.0
958,160 - PS417_04275 0.34 -0.6
958,221 + PS417_04275 0.36 -1.3
958,287 + PS417_04275 0.37 -1.4
958,287 + PS417_04275 0.37 -0.6
958,287 + PS417_04275 0.37 -2.1
958,288 - PS417_04275 0.37 +0.2
958,368 + PS417_04275 0.40 -1.2
958,369 - PS417_04275 0.40 -1.7
958,423 - PS417_04275 0.41 -2.2
958,423 - PS417_04275 0.41 -1.2
958,553 + PS417_04275 0.44 -0.6
958,553 + PS417_04275 0.44 -0.9
958,554 - PS417_04275 0.44 -2.8
958,554 - PS417_04275 0.44 -2.7
958,554 - PS417_04275 0.44 -0.4
958,710 + PS417_04275 0.49 -1.3
958,887 - PS417_04275 0.53 -3.3
958,887 - PS417_04275 0.53 -1.3
958,888 + PS417_04275 0.53 -1.4
958,889 - PS417_04275 0.53 -2.5
958,889 - PS417_04275 0.53 -0.4
958,889 - PS417_04275 0.53 -1.4
959,102 + PS417_04275 0.59 -1.2
959,539 + PS417_04275 0.70 -1.6
959,608 + PS417_04275 0.72 -0.4
959,609 - PS417_04275 0.72 -1.2
959,766 + PS417_04275 0.76 -0.0
959,767 - PS417_04275 0.76 -1.8
959,767 - PS417_04275 0.76 -1.8
959,767 - PS417_04275 0.76 -1.2
960,036 + PS417_04275 0.83 -1.7
960,036 + PS417_04275 0.83 -1.3
960,159 + PS417_04275 0.86 -1.1
960,159 + PS417_04275 0.86 +0.1
960,160 - PS417_04275 0.87 -0.3
960,160 - PS417_04275 0.87 -0.9
960,160 - PS417_04275 0.87 -2.0
960,334 - -0.6
960,334 - -2.6
960,497 + -1.3
960,498 - -1.5
960,606 + -1.6
960,606 + -1.4
960,606 + -0.6
960,606 + -1.0
960,606 + -2.5
960,606 + -1.9
960,607 - -2.0
960,607 - -1.0
960,607 - -2.2
960,607 - -1.4
960,607 - -1.1
960,687 + +0.7
960,687 + +0.3
960,687 + -0.9
960,687 + -0.6
960,688 - -0.3
960,833 - PS417_04280 0.13 +1.0
960,953 - PS417_04280 0.27 +0.4
960,953 - PS417_04280 0.27 -0.3
961,129 - PS417_04280 0.48 -0.1
961,195 - PS417_04280 0.56 -0.5
961,195 - PS417_04280 0.56 +0.2
961,339 - PS417_04280 0.73 +0.4
961,339 - PS417_04280 0.73 -1.3
961,390 - PS417_04280 0.79 -0.9
961,575 + +1.2
961,583 + +0.1
961,583 + -0.2
961,583 + -0.1
961,583 + -0.5
961,583 + +0.1
961,584 - +3.2
961,584 - -3.6
961,584 - -0.6
961,587 + +0.6
961,588 - +0.3
961,588 - -0.5
961,588 - +0.4
961,588 - +0.1
961,588 - +0.3
961,588 - -0.4

Or see this region's nucleotide sequence