Experiment: Vogels_fungal_media; pH 5.5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_03930 and PS417_03935 are separated by 61 nucleotides PS417_03935 and PS417_03940 overlap by 4 nucleotides PS417_03940 and PS417_03945 are separated by 113 nucleotides
PS417_03930: PS417_03930 - thymidine phosphorylase, at 877,230 to 879,353
_03930
PS417_03935: PS417_03935 - N-acetyl-anhydromuranmyl-L-alanine amidase, at 879,415 to 879,978
_03935
PS417_03940: PS417_03940 - membrane protein, at 879,975 to 880,811
_03940
PS417_03945: PS417_03945 - chemotaxis protein, at 880,925 to 882,955
_03945
Position (kb) 879
880 Strain fitness (log2 ratio) -2
-1
0
1 at 878.463 kb on + strand, within PS417_03930 at 878.463 kb on + strand, within PS417_03930 at 878.463 kb on + strand, within PS417_03930 at 878.464 kb on - strand, within PS417_03930 at 879.022 kb on + strand, within PS417_03930 at 879.023 kb on - strand, within PS417_03930 at 879.186 kb on + strand at 879.187 kb on - strand at 879.187 kb on - strand at 879.187 kb on - strand at 879.187 kb on - strand at 879.187 kb on - strand at 879.187 kb on - strand at 879.187 kb on - strand at 879.187 kb on - strand at 879.414 kb on + strand at 879.520 kb on - strand, within PS417_03935 at 879.604 kb on + strand, within PS417_03935 at 879.604 kb on + strand, within PS417_03935 at 879.626 kb on + strand, within PS417_03935 at 879.626 kb on + strand, within PS417_03935 at 879.626 kb on + strand, within PS417_03935 at 879.627 kb on - strand, within PS417_03935 at 880.003 kb on + strand at 880.136 kb on - strand, within PS417_03940 at 880.136 kb on - strand, within PS417_03940 at 880.139 kb on - strand, within PS417_03940 at 880.231 kb on - strand, within PS417_03940 at 880.231 kb on - strand, within PS417_03940 at 880.231 kb on - strand, within PS417_03940 at 880.231 kb on - strand at 880.492 kb on - strand, within PS417_03940 at 880.817 kb on + strand at 880.831 kb on + strand at 880.832 kb on - strand at 880.832 kb on - strand at 880.861 kb on + strand at 880.861 kb on + strand at 880.862 kb on - strand at 880.862 kb on - strand at 880.863 kb on + strand at 880.863 kb on + strand at 880.863 kb on + strand at 880.863 kb on + strand at 880.864 kb on - strand at 880.864 kb on - strand at 880.864 kb on - strand at 880.864 kb on - strand at 880.864 kb on - strand at 880.919 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Vogels_fungal_media; pH 5.5 remove 878,463 + PS417_03930 0.58 -0.5 878,463 + PS417_03930 0.58 +0.2 878,463 + PS417_03930 0.58 -0.6 878,464 - PS417_03930 0.58 -0.3 879,022 + PS417_03930 0.84 -2.2 879,023 - PS417_03930 0.84 +0.1 879,186 + +1.5 879,187 - -0.5 879,187 - +0.9 879,187 - -1.2 879,187 - -1.0 879,187 - -1.7 879,187 - +0.0 879,187 - -0.4 879,187 - +0.3 879,414 + +0.0 879,520 - PS417_03935 0.19 -1.3 879,604 + PS417_03935 0.34 +0.2 879,604 + PS417_03935 0.34 -1.7 879,626 + PS417_03935 0.37 -0.5 879,626 + PS417_03935 0.37 -0.8 879,626 + PS417_03935 0.37 -1.8 879,627 - PS417_03935 0.38 -0.5 880,003 + +0.0 880,136 - PS417_03940 0.19 -0.1 880,136 - PS417_03940 0.19 +0.4 880,139 - PS417_03940 0.20 +0.7 880,231 - PS417_03940 0.31 -0.6 880,231 - PS417_03940 0.31 +0.7 880,231 - PS417_03940 0.31 -1.1 880,231 - +0.6 880,492 - PS417_03940 0.62 +0.5 880,817 + -0.2 880,831 + -0.3 880,832 - -0.3 880,832 - -1.2 880,861 + -0.6 880,861 + -0.1 880,862 - +0.2 880,862 - -0.6 880,863 + +0.6 880,863 + +0.0 880,863 + +1.1 880,863 + +0.4 880,864 - -0.1 880,864 - +0.4 880,864 - +0.5 880,864 - -0.3 880,864 - +0.1 880,919 + +0.0
Or see this region's nucleotide sequence