Strain Fitness in Pseudomonas simiae WCS417 around PS417_03455
Experiment: Vogels_fungal_media; pH 5.5
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Vogels_fungal_media; pH 5.5 |
---|---|---|---|---|---|
remove | |||||
793,235 | + | PS417_03450 | 0.14 | -0.2 | |
793,294 | + | PS417_03450 | 0.25 | -0.0 | |
793,488 | - | PS417_03450 | 0.60 | +0.2 | |
793,555 | + | PS417_03450 | 0.72 | +0.1 | |
793,727 | - | -0.5 | |||
793,762 | + | +0.6 | |||
793,856 | + | +1.1 | |||
793,856 | + | -0.0 | |||
793,856 | + | +1.0 | |||
794,321 | + | PS417_03455 | 0.33 | -1.8 | |
794,321 | + | PS417_03455 | 0.33 | -1.4 | |
794,322 | - | PS417_03455 | 0.33 | -0.1 | |
794,817 | + | +1.6 | |||
795,181 | - | +0.1 | |||
795,181 | - | +0.5 | |||
795,218 | - | +0.0 | |||
795,218 | - | +0.2 | |||
796,000 | + | PS417_03460 | 0.46 | -1.8 | |
796,000 | + | PS417_03460 | 0.46 | +0.1 | |
796,003 | + | PS417_03460 | 0.46 | +0.2 | |
796,003 | + | PS417_03460 | 0.46 | +1.3 | |
796,004 | - | PS417_03460 | 0.46 | -0.1 |
Or see this region's nucleotide sequence