Experiment: Vogels_fungal_media; pH 5.5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_03295 and PS417_03300 overlap by 8 nucleotides PS417_03300 and PS417_03305 are separated by 120 nucleotides PS417_03305 and PS417_03310 are separated by 139 nucleotides PS417_03310 and PS417_03315 overlap by 4 nucleotides
PS417_03295: PS417_03295 - energy transducer TonB, at 756,343 to 757,128
_03295
PS417_03300: PS417_03300 - alanine acetyltransferase, at 757,121 to 757,573
_03300
PS417_03305: PS417_03305 - HPr, at 757,694 to 758,098
_03305
PS417_03310: PS417_03310 - carbonate dehydratase, at 758,238 to 758,882
_03310
PS417_03315: PS417_03315 - hypothetical protein, at 758,879 to 759,406
_03315
Position (kb) 757
758
759 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 757.134 kb on + strand at 757.245 kb on - strand, within PS417_03300 at 757.338 kb on + strand, within PS417_03300 at 757.469 kb on + strand, within PS417_03300 at 757.470 kb on - strand, within PS417_03300 at 757.512 kb on - strand, within PS417_03300 at 757.512 kb on - strand, within PS417_03300 at 757.515 kb on - strand, within PS417_03300 at 758.123 kb on + strand at 758.125 kb on + strand at 758.125 kb on + strand at 758.125 kb on + strand at 758.126 kb on - strand at 758.126 kb on - strand at 758.126 kb on - strand at 758.248 kb on + strand at 758.248 kb on + strand at 758.347 kb on - strand, within PS417_03310 at 758.347 kb on - strand, within PS417_03310 at 758.532 kb on + strand, within PS417_03310 at 758.617 kb on - strand, within PS417_03310 at 758.619 kb on + strand, within PS417_03310 at 758.781 kb on + strand, within PS417_03310 at 758.782 kb on - strand, within PS417_03310 at 758.782 kb on - strand, within PS417_03310 at 758.880 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Vogels_fungal_media; pH 5.5 remove 757,134 + -0.4 757,245 - PS417_03300 0.27 +0.6 757,338 + PS417_03300 0.48 +0.1 757,469 + PS417_03300 0.77 -0.6 757,470 - PS417_03300 0.77 -1.2 757,512 - PS417_03300 0.86 -1.5 757,512 - PS417_03300 0.86 -1.0 757,515 - PS417_03300 0.87 -0.7 758,123 + +2.6 758,125 + -0.6 758,125 + -0.2 758,125 + +0.4 758,126 - -0.1 758,126 - +0.5 758,126 - +0.0 758,248 + -1.6 758,248 + -3.9 758,347 - PS417_03310 0.17 -0.7 758,347 - PS417_03310 0.17 -3.4 758,532 + PS417_03310 0.46 -3.2 758,617 - PS417_03310 0.59 -1.8 758,619 + PS417_03310 0.59 +0.0 758,781 + PS417_03310 0.84 -4.7 758,782 - PS417_03310 0.84 -1.1 758,782 - PS417_03310 0.84 -1.7 758,880 + -0.7
Or see this region's nucleotide sequence