Strain Fitness in Pseudomonas simiae WCS417 around PS417_03100

Experiment: Vogels_fungal_media; pH 5.5

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_03095 and PS417_03100 overlap by 4 nucleotidesPS417_03100 and PS417_03105 overlap by 4 nucleotides PS417_03095: PS417_03095 - ATPase, at 710,106 to 711,377 _03095 PS417_03100: PS417_03100 - pilus assembly protein, at 711,374 to 712,567 _03100 PS417_03105: PS417_03105 - secretin, at 712,564 to 713,781 _03105 Position (kb) 711 712 713Strain fitness (log2 ratio) -1 0 1at 710.460 kb on + strand, within PS417_03095at 710.460 kb on + strand, within PS417_03095at 710.461 kb on - strand, within PS417_03095at 710.598 kb on + strand, within PS417_03095at 710.598 kb on + strand, within PS417_03095at 710.598 kb on + strand, within PS417_03095at 710.598 kb on + strand, within PS417_03095at 710.599 kb on - strand, within PS417_03095at 711.185 kb on + strand, within PS417_03095at 711.185 kb on + strand, within PS417_03095at 711.185 kb on + strand, within PS417_03095at 711.186 kb on - strand, within PS417_03095at 711.186 kb on - strand, within PS417_03095at 711.197 kb on - strand, within PS417_03095at 711.289 kb on + strandat 711.289 kb on + strandat 711.290 kb on - strandat 712.403 kb on + strand, within PS417_03100at 712.404 kb on - strand, within PS417_03100at 712.582 kb on - strandat 712.637 kb on + strandat 712.637 kb on + strandat 712.944 kb on - strand, within PS417_03105at 712.944 kb on - strand, within PS417_03105at 713.039 kb on + strand, within PS417_03105at 713.039 kb on + strand, within PS417_03105at 713.040 kb on - strand, within PS417_03105

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Per-strain Table

Position Strand Gene LocusTag Fraction Vogels_fungal_media; pH 5.5
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710,460 + PS417_03095 0.28 +1.0
710,460 + PS417_03095 0.28 +0.2
710,461 - PS417_03095 0.28 -1.0
710,598 + PS417_03095 0.39 +0.7
710,598 + PS417_03095 0.39 +0.4
710,598 + PS417_03095 0.39 +1.0
710,598 + PS417_03095 0.39 -0.9
710,599 - PS417_03095 0.39 -0.0
711,185 + PS417_03095 0.85 +0.2
711,185 + PS417_03095 0.85 -0.4
711,185 + PS417_03095 0.85 -0.6
711,186 - PS417_03095 0.85 +1.3
711,186 - PS417_03095 0.85 -0.0
711,197 - PS417_03095 0.86 +0.5
711,289 + -0.0
711,289 + +0.1
711,290 - -0.3
712,403 + PS417_03100 0.86 -0.4
712,404 - PS417_03100 0.86 -0.6
712,582 - +0.2
712,637 + -0.2
712,637 + +0.5
712,944 - PS417_03105 0.31 -0.7
712,944 - PS417_03105 0.31 -0.0
713,039 + PS417_03105 0.39 -0.2
713,039 + PS417_03105 0.39 +0.1
713,040 - PS417_03105 0.39 -0.9

Or see this region's nucleotide sequence