Strain Fitness in Pseudomonas simiae WCS417 around PS417_28350

Experiment: Vogels_fungal_media; pH 5.5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Vogels_fungal_media; pH 5.5
6,118,474	+		PS417_28345	0.34	-0.6
6,118,475	-		PS417_28345	0.34	+0.9
6,118,475	-				-0.1
6,118,510	-		PS417_28345	0.37	-0.1
6,118,519	-		PS417_28345	0.37	+0.0
6,118,519	-				+1.2
6,118,555	-		PS417_28345	0.40	-0.0
6,118,714	-		PS417_28345	0.51	+0.1
6,118,714	-		PS417_28345	0.51	+0.3
6,118,861	-		PS417_28345	0.61	+2.1
6,118,914	+		PS417_28345	0.65	+0.4
6,118,915	-		PS417_28345	0.65	-0.7
6,118,987	-		PS417_28345	0.70	+0.0
6,119,151	+		PS417_28345	0.81	-0.6
6,119,154	-		PS417_28345	0.81	-0.1
6,119,158	+		PS417_28345	0.82	-0.5
6,119,434	-				+0.1
6,119,437	+				+0.1
6,119,437	+				-1.8
6,119,438	-				-0.5
6,119,438	-				-1.1
6,119,551	-		PS417_28350	0.11	-1.0
6,119,751	+		PS417_28350	0.27	+1.6
6,119,784	-		PS417_28350	0.30	-2.0
6,119,909	-		PS417_28350	0.41	-2.2
6,119,909	-		PS417_28350	0.41	-3.6
6,120,126	+		PS417_28350	0.59	+0.6
6,120,127	-		PS417_28350	0.59	-0.7
6,120,228	+		PS417_28350	0.68	-0.6
6,120,229	-		PS417_28350	0.68	-1.2
6,120,229	-		PS417_28350	0.68	-0.3
6,120,259	-		PS417_28350	0.70	-0.8
6,120,259	-		PS417_28350	0.70	-1.1
6,120,259	-		PS417_28350	0.70	-1.0
6,120,279	+		PS417_28350	0.72	-1.2
6,120,279	+		PS417_28350	0.72	+0.3
6,120,279	+		PS417_28350	0.72	-1.5
6,120,279	+		PS417_28350	0.72	+0.8
6,120,280	-		PS417_28350	0.72	-0.8
6,120,280	-		PS417_28350	0.72	-1.0
6,120,280	-		PS417_28350	0.72	-0.6
6,120,293	-		PS417_28350	0.73	-1.8
6,120,293	-		PS417_28350	0.73	-0.6
6,120,581	-				-0.1
6,120,584	+				-0.8
6,120,670	-				+1.2
6,120,696	+				+0.2
6,120,696	+				+1.2
6,120,697	-				-0.6
6,120,700	-				-0.6
6,120,871	+		PS417_28355	0.22	+0.4
6,120,877	-		PS417_28355	0.23	-0.4
6,121,117	+		PS417_28355	0.53	+0.1
6,121,251	+		PS417_28355	0.70	-0.2
6,121,344	+		PS417_28355	0.82	+0.5