Experiment: Vogels_fungal_media; pH 5.5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_27430 and PS417_27435 are separated by 512 nucleotides PS417_27435 and PS417_27440 are separated by 18 nucleotides
PS417_27430: PS417_27430 - hypothetical protein, at 5,918,597 to 5,919,832
_27430
PS417_27435: PS417_27435 - polyphosphate kinase, at 5,920,345 to 5,922,567
_27435
PS417_27440: PS417_27440 - delta-aminolevulinic acid dehydratase, at 5,922,586 to 5,923,599
_27440
Position (kb) 5920
5921
5922
5923 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5919.487 kb on - strand, within PS417_27430 at 5919.487 kb on - strand, within PS417_27430 at 5919.524 kb on + strand, within PS417_27430 at 5919.524 kb on + strand, within PS417_27430 at 5919.525 kb on - strand, within PS417_27430 at 5919.662 kb on + strand, within PS417_27430 at 5919.749 kb on - strand at 5919.813 kb on + strand at 5919.856 kb on - strand at 5919.878 kb on + strand at 5919.879 kb on - strand at 5919.955 kb on + strand at 5919.955 kb on + strand at 5920.009 kb on + strand at 5920.009 kb on + strand at 5920.009 kb on + strand at 5920.009 kb on + strand at 5920.009 kb on + strand at 5920.010 kb on - strand at 5920.010 kb on - strand at 5920.029 kb on + strand at 5920.029 kb on + strand at 5920.030 kb on - strand at 5920.249 kb on - strand at 5920.252 kb on - strand at 5920.629 kb on - strand, within PS417_27435 at 5920.770 kb on - strand, within PS417_27435 at 5921.040 kb on - strand, within PS417_27435 at 5921.044 kb on - strand, within PS417_27435 at 5921.621 kb on - strand, within PS417_27435 at 5921.812 kb on + strand, within PS417_27435 at 5921.812 kb on + strand, within PS417_27435 at 5921.813 kb on - strand, within PS417_27435 at 5921.813 kb on - strand, within PS417_27435 at 5921.816 kb on + strand, within PS417_27435 at 5921.816 kb on + strand, within PS417_27435 at 5921.817 kb on - strand, within PS417_27435 at 5922.399 kb on - strand at 5922.588 kb on - strand at 5922.630 kb on - strand at 5922.660 kb on + strand at 5922.753 kb on - strand, within PS417_27440 at 5922.753 kb on - strand, within PS417_27440 at 5922.753 kb on - strand, within PS417_27440 at 5922.807 kb on - strand, within PS417_27440 at 5922.862 kb on + strand, within PS417_27440 at 5922.863 kb on - strand, within PS417_27440 at 5922.863 kb on - strand, within PS417_27440 at 5922.863 kb on - strand, within PS417_27440 at 5922.968 kb on + strand, within PS417_27440 at 5922.968 kb on + strand, within PS417_27440 at 5922.969 kb on - strand, within PS417_27440 at 5922.969 kb on - strand, within PS417_27440 at 5922.971 kb on + strand, within PS417_27440 at 5922.972 kb on - strand, within PS417_27440 at 5922.983 kb on + strand, within PS417_27440 at 5922.983 kb on + strand, within PS417_27440 at 5922.984 kb on - strand, within PS417_27440 at 5923.160 kb on + strand, within PS417_27440 at 5923.505 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Vogels_fungal_media; pH 5.5 remove 5,919,487 - PS417_27430 0.72 -0.5 5,919,487 - PS417_27430 0.72 +0.2 5,919,524 + PS417_27430 0.75 -0.1 5,919,524 + PS417_27430 0.75 -0.7 5,919,525 - PS417_27430 0.75 +0.6 5,919,662 + PS417_27430 0.86 +1.4 5,919,749 - -1.4 5,919,813 + -0.4 5,919,856 - -0.5 5,919,878 + -0.4 5,919,879 - -0.2 5,919,955 + -1.2 5,919,955 + +0.3 5,920,009 + -1.1 5,920,009 + +0.4 5,920,009 + -1.0 5,920,009 + -0.9 5,920,009 + -0.3 5,920,010 - +0.4 5,920,010 - +0.5 5,920,029 + +0.2 5,920,029 + -0.0 5,920,030 - +1.2 5,920,249 - +0.4 5,920,252 - +0.3 5,920,629 - PS417_27435 0.13 -2.1 5,920,770 - PS417_27435 0.19 -1.7 5,921,040 - PS417_27435 0.31 -1.5 5,921,044 - PS417_27435 0.31 -1.2 5,921,621 - PS417_27435 0.57 -2.1 5,921,812 + PS417_27435 0.66 -3.5 5,921,812 + PS417_27435 0.66 -1.8 5,921,813 - PS417_27435 0.66 -1.0 5,921,813 - PS417_27435 0.66 -3.5 5,921,816 + PS417_27435 0.66 -2.2 5,921,816 + PS417_27435 0.66 -0.0 5,921,817 - PS417_27435 0.66 -3.3 5,922,399 - -2.9 5,922,588 - +0.0 5,922,630 - -0.2 5,922,660 + +0.6 5,922,753 - PS417_27440 0.16 -0.2 5,922,753 - PS417_27440 0.16 +0.3 5,922,753 - PS417_27440 0.16 -0.5 5,922,807 - PS417_27440 0.22 +0.2 5,922,862 + PS417_27440 0.27 +0.1 5,922,863 - PS417_27440 0.27 +0.5 5,922,863 - PS417_27440 0.27 +1.9 5,922,863 - PS417_27440 0.27 +0.1 5,922,968 + PS417_27440 0.38 -0.8 5,922,968 + PS417_27440 0.38 +0.8 5,922,969 - PS417_27440 0.38 +0.6 5,922,969 - PS417_27440 0.38 +0.0 5,922,971 + PS417_27440 0.38 +0.6 5,922,972 - PS417_27440 0.38 +0.6 5,922,983 + PS417_27440 0.39 -1.0 5,922,983 + PS417_27440 0.39 +0.4 5,922,984 - PS417_27440 0.39 -0.6 5,923,160 + PS417_27440 0.57 +0.0 5,923,505 - +1.0
Or see this region's nucleotide sequence