Strain Fitness in Pseudomonas simiae WCS417 around PS417_27245

Experiment: Vogels_fungal_media; pH 5.5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Vogels_fungal_media; pH 5.5
5,879,889	+				+0.7
5,879,890	-				+1.1
5,879,890	-				+1.0
5,879,893	+				-0.2
5,879,893	+				-0.0
5,879,893	+				+0.6
5,879,893	+				+0.0
5,879,893	+				-1.3
5,879,893	+				+0.1
5,879,894	-				-0.9
5,879,894	-				-1.2
5,879,894	-				-0.5
5,879,894	-				-1.1
5,879,894	-				+0.4
5,879,919	+				+0.7
5,879,963	-				+0.9
5,879,963	-				-0.6
5,880,014	-				-0.3
5,880,198	+		PS417_27240	0.30	-0.5
5,880,198	+		PS417_27240	0.30	+0.2
5,880,198	+		PS417_27240	0.30	-0.2
5,880,199	-		PS417_27240	0.30	+0.7
5,880,199	-				-1.1
5,880,199	-		PS417_27240	0.30	+1.2
5,880,232	+		PS417_27240	0.35	+0.1
5,880,279	+		PS417_27240	0.42	-0.6
5,880,335	-		PS417_27240	0.51	+0.1
5,880,335	-		PS417_27240	0.51	-0.7
5,880,336	+		PS417_27240	0.51	+0.6
5,880,337	-		PS417_27240	0.51	-0.5
5,880,337	-		PS417_27240	0.51	-0.6
5,880,343	-		PS417_27240	0.52	-0.4
5,880,370	+		PS417_27240	0.56	-0.5
5,880,371	-		PS417_27240	0.56	-0.6
5,880,469	+		PS417_27240	0.71	-0.8
5,880,476	+		PS417_27240	0.72	-0.9
5,880,476	+		PS417_27240	0.72	+1.0
5,880,476	+		PS417_27240	0.72	-1.1
5,880,535	+		PS417_27240	0.81	+0.5
5,880,536	-		PS417_27240	0.81	-0.2
5,880,536	-		PS417_27240	0.81	+0.5
5,880,536	-		PS417_27240	0.81	-0.3
5,880,740	+				-0.2
5,880,740	+				-0.1
5,880,740	+				-1.7
5,880,741	-				-0.4
5,880,741	-				-0.1
5,880,742	+				-0.6
5,880,743	-				-0.1
5,880,896	+				-2.1
5,880,897	-				-0.1
5,880,897	-				-1.1
5,880,961	+		PS417_27245	0.12	-0.5
5,880,962	-		PS417_27245	0.12	+0.2
5,881,214	-		PS417_27245	0.34	+0.9
5,881,250	-		PS417_27245	0.37	-0.5
5,881,267	+		PS417_27245	0.39	-1.1
5,881,267	+		PS417_27245	0.39	-1.3
5,881,268	-		PS417_27245	0.39	-1.0
5,881,643	-		PS417_27245	0.72	-0.7
5,881,842	+		PS417_27245	0.89	-0.9
5,881,842	+		PS417_27245	0.89	-1.8
5,881,843	-		PS417_27245	0.89	-1.3
5,881,866	-				-0.8
5,882,023	+				-0.1
5,882,023	+				+0.2
5,882,024	-				-0.2
5,882,024	-				+0.2
5,882,116	-				+0.8
5,882,265	+		PS417_27250	0.45	+0.2
5,882,265	+		PS417_27250	0.45	+0.5
5,882,266	-		PS417_27250	0.45	+0.1
5,882,266	-		PS417_27250	0.45	+0.6
5,882,269	+		PS417_27250	0.46	+0.0
5,882,393	-		PS417_27250	0.78	-0.6
5,882,476	+				-0.9
5,882,477	-				-0.8
5,882,496	+				-0.7
5,882,496	+				-0.0
5,882,496	+				+0.4
5,882,497	-				-0.6
5,882,527	-				+0.3
5,882,531	+				+0.1
5,882,707	-		PS417_27255	0.16	+0.4
5,882,738	-		PS417_27255	0.19	-0.3
5,882,759	-		PS417_27255	0.21	-0.4
5,882,829	+		PS417_27255	0.28	-0.7