Experiment: Vogels_fungal_media; pH 5.5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_27035 and PS417_27040 are separated by 205 nucleotides PS417_27040 and PS417_27045 are separated by 63 nucleotides PS417_27045 and PS417_27050 are separated by 134 nucleotides
PS417_27035: PS417_27035 - FAD-linked oxidase, at 5,837,690 to 5,839,084
_27035
PS417_27040: PS417_27040 - 3-phosphoglycerate dehydrogenase, at 5,839,290 to 5,840,519
_27040
PS417_27045: PS417_27045 - ATPase, at 5,840,583 to 5,841,023
_27045
PS417_27050: PS417_27050 - ABC transporter substrate-binding protein, at 5,841,158 to 5,841,652
_27050
Position (kb) 5839
5840
5841 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 5838.511 kb on + strand, within PS417_27035 at 5838.703 kb on - strand, within PS417_27035 at 5838.805 kb on + strand, within PS417_27035 at 5838.805 kb on + strand, within PS417_27035 at 5838.806 kb on - strand, within PS417_27035 at 5838.806 kb on - strand, within PS417_27035 at 5838.806 kb on - strand, within PS417_27035 at 5838.806 kb on - strand, within PS417_27035 at 5839.055 kb on + strand at 5839.055 kb on + strand at 5839.141 kb on + strand at 5839.141 kb on + strand at 5839.142 kb on - strand at 5839.142 kb on - strand at 5839.142 kb on - strand at 5839.162 kb on - strand at 5839.162 kb on - strand at 5839.171 kb on + strand at 5839.398 kb on + strand at 5839.398 kb on + strand at 5839.399 kb on - strand at 5839.399 kb on - strand at 5839.399 kb on - strand at 5839.399 kb on - strand at 5839.828 kb on - strand, within PS417_27040 at 5840.233 kb on - strand, within PS417_27040 at 5840.233 kb on - strand, within PS417_27040 at 5840.584 kb on + strand at 5840.584 kb on + strand at 5840.588 kb on + strand at 5840.616 kb on + strand at 5840.616 kb on + strand at 5840.617 kb on - strand at 5840.910 kb on + strand, within PS417_27045 at 5840.910 kb on + strand, within PS417_27045 at 5840.910 kb on + strand, within PS417_27045 at 5840.911 kb on - strand, within PS417_27045 at 5841.104 kb on + strand at 5841.104 kb on + strand at 5841.148 kb on - strand at 5841.180 kb on + strand at 5841.180 kb on + strand at 5841.181 kb on - strand at 5841.234 kb on + strand, within PS417_27050 at 5841.234 kb on + strand, within PS417_27050 at 5841.234 kb on + strand, within PS417_27050 at 5841.234 kb on + strand, within PS417_27050 at 5841.235 kb on - strand, within PS417_27050 at 5841.373 kb on + strand, within PS417_27050 at 5841.376 kb on + strand, within PS417_27050 at 5841.376 kb on + strand, within PS417_27050 at 5841.377 kb on - strand at 5841.422 kb on + strand, within PS417_27050 at 5841.423 kb on - strand, within PS417_27050 at 5841.423 kb on - strand, within PS417_27050 at 5841.448 kb on + strand, within PS417_27050
Per-strain Table
Position Strand Gene LocusTag Fraction Vogels_fungal_media; pH 5.5 remove 5,838,511 + PS417_27035 0.59 -0.6 5,838,703 - PS417_27035 0.73 -0.6 5,838,805 + PS417_27035 0.80 +0.8 5,838,805 + PS417_27035 0.80 +0.4 5,838,806 - PS417_27035 0.80 -0.2 5,838,806 - PS417_27035 0.80 +0.5 5,838,806 - PS417_27035 0.80 +2.2 5,838,806 - PS417_27035 0.80 +0.2 5,839,055 + +0.8 5,839,055 + -1.8 5,839,141 + -0.6 5,839,141 + -1.6 5,839,142 - +0.2 5,839,142 - +0.2 5,839,142 - +0.3 5,839,162 - -0.4 5,839,162 - +0.6 5,839,171 + -0.2 5,839,398 + -1.4 5,839,398 + -4.3 5,839,399 - -3.5 5,839,399 - -2.7 5,839,399 - -3.7 5,839,399 - -0.6 5,839,828 - PS417_27040 0.44 -1.2 5,840,233 - PS417_27040 0.77 -3.4 5,840,233 - PS417_27040 0.77 -2.9 5,840,584 + -0.5 5,840,584 + -0.3 5,840,588 + +0.6 5,840,616 + +0.3 5,840,616 + +0.4 5,840,617 - -0.2 5,840,910 + PS417_27045 0.74 -1.0 5,840,910 + PS417_27045 0.74 -0.6 5,840,910 + PS417_27045 0.74 +0.2 5,840,911 - PS417_27045 0.74 +0.7 5,841,104 + -0.5 5,841,104 + -0.2 5,841,148 - -1.6 5,841,180 + -0.9 5,841,180 + +1.0 5,841,181 - -0.3 5,841,234 + PS417_27050 0.15 -2.2 5,841,234 + PS417_27050 0.15 +1.1 5,841,234 + PS417_27050 0.15 -0.2 5,841,234 + PS417_27050 0.15 -2.0 5,841,235 - PS417_27050 0.16 -0.4 5,841,373 + PS417_27050 0.43 -0.6 5,841,376 + PS417_27050 0.44 -0.2 5,841,376 + PS417_27050 0.44 -0.6 5,841,377 - +0.2 5,841,422 + PS417_27050 0.53 -0.8 5,841,423 - PS417_27050 0.54 -0.5 5,841,423 - PS417_27050 0.54 +0.2 5,841,448 + PS417_27050 0.59 -0.3
Or see this region's nucleotide sequence