Strain Fitness in Pseudomonas simiae WCS417 around PS417_27020

Experiment: Vogels_fungal_media; pH 5.5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Vogels_fungal_media; pH 5.5
5,833,942	+				+0.7
5,833,943	-				-1.7
5,834,048	+				+0.5
5,834,048	+				+1.1
5,834,050	+				-0.1
5,834,050	+				+0.3
5,834,050	+				+0.4
5,834,051	-				-1.9
5,834,051	-				+0.9
5,834,823	+				-0.7
5,834,823	+				-0.0
5,834,823	+				+0.5
5,834,823	+				+0.1
5,834,823	+				+1.7
5,834,824	-				-0.3
5,834,824	-				-0.1
5,834,824	-				-0.7
5,834,824	-				+0.1
5,834,824	-				+0.6
5,835,024	+		PS417_27020	0.25	-1.2
5,835,096	+		PS417_27020	0.33	+1.7
5,835,138	+		PS417_27020	0.37	+0.3
5,835,139	-		PS417_27020	0.37	+0.9
5,835,139	-		PS417_27020	0.37	+0.5
5,835,195	+		PS417_27020	0.43	+0.9
5,835,336	+		PS417_27020	0.59	-1.8
5,835,336	+		PS417_27020	0.59	+0.6
5,835,337	-		PS417_27020	0.59	-0.2
5,835,395	-		PS417_27020	0.65	+1.0
5,835,448	+		PS417_27020	0.71	-0.6
5,835,483	+		PS417_27020	0.75	+1.7
5,835,483	+		PS417_27020	0.75	-0.1
5,835,483	+		PS417_27020	0.75	+1.7
5,835,484	-		PS417_27020	0.75	+0.5
5,835,522	-		PS417_27020	0.79	+0.2
5,835,746	+				+0.0
5,835,747	-				-0.1
5,835,766	-				-0.1
5,835,766	-				+0.0
5,835,772	-				-0.6
5,835,772	-				+1.1
5,835,823	-				+0.1
5,835,834	+				-0.2
5,835,882	+				+0.1
5,835,882	+				-0.2
5,835,883	-				-0.4
5,835,883	-				-0.0
5,835,883	-				-1.0
5,836,150	+		PS417_27025	0.34	-1.6
5,836,257	+		PS417_27025	0.46	-0.7
5,836,257	+		PS417_27025	0.46	+0.6
5,836,257	+		PS417_27025	0.46	+0.7
5,836,258	-		PS417_27025	0.46	+0.1
5,836,258	-		PS417_27025	0.46	+0.9
5,836,258	-		PS417_27025	0.46	-0.4
5,836,494	+		PS417_27025	0.71	-0.1
5,836,494	+		PS417_27025	0.71	-0.7
5,836,495	-		PS417_27025	0.71	-0.3
5,836,561	-		PS417_27025	0.79	+0.4
5,836,561	-		PS417_27025	0.79	-3.1
5,836,575	-		PS417_27025	0.80	-0.1