Experiment: Vogels_fungal_media; pH 5.5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_26900 and PS417_26905 are separated by 96 nucleotides PS417_26905 and PS417_26910 are separated by 69 nucleotides PS417_26910 and PS417_26915 overlap by 8 nucleotides
PS417_26900: PS417_26900 - L-cystine transporter tcyP, at 5,809,263 to 5,810,654
_26900
PS417_26905: PS417_26905 - diacylglycerol kinase, at 5,810,751 to 5,811,263
_26905
PS417_26910: PS417_26910 - membrane protein, at 5,811,333 to 5,812,703
_26910
PS417_26915: PS417_26915 - GTPase SAR1, at 5,812,696 to 5,814,063
_26915
Position (kb) 5811
5812
5813 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5810.606 kb on + strand at 5810.753 kb on - strand at 5811.298 kb on + strand at 5811.740 kb on - strand, within PS417_26910 at 5811.805 kb on + strand, within PS417_26910 at 5811.805 kb on + strand, within PS417_26910 at 5811.899 kb on + strand, within PS417_26910 at 5811.899 kb on + strand, within PS417_26910 at 5811.900 kb on - strand, within PS417_26910 at 5811.960 kb on - strand, within PS417_26910 at 5812.119 kb on + strand, within PS417_26910 at 5812.120 kb on - strand, within PS417_26910 at 5812.120 kb on - strand, within PS417_26910 at 5812.701 kb on + strand at 5812.702 kb on - strand at 5812.871 kb on - strand, within PS417_26915 at 5813.056 kb on + strand, within PS417_26915 at 5813.272 kb on + strand, within PS417_26915 at 5813.273 kb on - strand, within PS417_26915
Per-strain Table
Position Strand Gene LocusTag Fraction Vogels_fungal_media; pH 5.5 remove 5,810,606 + -0.0 5,810,753 - -0.2 5,811,298 + +2.0 5,811,740 - PS417_26910 0.30 -0.6 5,811,805 + PS417_26910 0.34 +0.6 5,811,805 + PS417_26910 0.34 -1.0 5,811,899 + PS417_26910 0.41 -0.2 5,811,899 + PS417_26910 0.41 -0.5 5,811,900 - PS417_26910 0.41 -1.6 5,811,960 - PS417_26910 0.46 +0.1 5,812,119 + PS417_26910 0.57 -0.3 5,812,120 - PS417_26910 0.57 -0.7 5,812,120 - PS417_26910 0.57 -1.8 5,812,701 + -0.2 5,812,702 - +0.6 5,812,871 - PS417_26915 0.13 -0.0 5,813,056 + PS417_26915 0.26 -1.3 5,813,272 + PS417_26915 0.42 -0.2 5,813,273 - PS417_26915 0.42 +0.4
Or see this region's nucleotide sequence