Strain Fitness in Pseudomonas simiae WCS417 around PS417_26890

Experiment: Vogels_fungal_media; pH 5.5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Vogels_fungal_media; pH 5.5
5,805,052	-				+0.6
5,805,168	+				+0.4
5,805,168	+				+0.1
5,805,169	-				+1.1
5,805,169	-				+0.7
5,805,169	-				-0.2
5,805,169	-				+0.8
5,805,170	+				-0.6
5,805,182	+				+0.5
5,805,183	-				-0.7
5,805,209	+				+0.7
5,805,247	+				+0.5
5,805,505	-				+1.1
5,805,538	+				+1.4
5,805,538	+				-0.4
5,805,588	+				+1.6
5,805,588	+				-0.5
5,805,753	-				-1.1
5,805,795	-				-0.5
5,805,886	+				+0.9
5,805,887	-				-1.6
5,805,914	+				-0.5
5,805,915	-				-2.8
5,805,917	+				+0.6
5,805,917	+				-1.3
5,805,917	+				-0.2
5,805,917	+				+0.2
5,805,917	+				+0.3
5,805,918	-				-1.2
5,806,218	-		PS417_26890	0.15	-1.4
5,806,259	+		PS417_26890	0.17	-3.3
5,806,259	+		PS417_26890	0.17	-1.4
5,806,259	+		PS417_26890	0.17	+1.5
5,806,259	+		PS417_26890	0.17	-2.7
5,806,259	+		PS417_26890	0.17	-5.1
5,806,260	-		PS417_26890	0.17	-2.9
5,806,260	-		PS417_26890	0.17	+0.1
5,806,260	-		PS417_26890	0.17	-3.4
5,806,260	-		PS417_26890	0.17	-5.1
5,806,487	+		PS417_26890	0.29	-1.9
5,806,899	-		PS417_26890	0.52	-1.4
5,807,183	+		PS417_26890	0.67	+2.4
5,807,578	-		PS417_26890	0.89	-2.5
5,807,717	+				-2.2
5,807,718	-				-3.8
5,807,784	-				+0.8
5,807,784	-				-1.7
5,807,784	-				+0.6
5,807,840	+				-0.7
5,807,841	-				-0.5
5,807,913	+				+0.6
5,807,913	+				+0.5
5,807,914	-				+0.5
5,808,078	+		PS417_26895	0.11	+0.3
5,808,078	+		PS417_26895	0.11	-0.3
5,808,079	-		PS417_26895	0.11	-0.9
5,808,079	-		PS417_26895	0.11	-0.7
5,808,079	-		PS417_26895	0.11	-1.3
5,808,079	-		PS417_26895	0.11	+0.6
5,808,079	-		PS417_26895	0.11	-0.1
5,808,147	+		PS417_26895	0.17	+0.5
5,808,176	+		PS417_26895	0.20	-0.2
5,808,176	+		PS417_26895	0.20	-0.4
5,808,176	+		PS417_26895	0.20	-0.7
5,808,176	+		PS417_26895	0.20	+0.6
5,808,177	-		PS417_26895	0.20	-0.7
5,808,177	-		PS417_26895	0.20	-0.1
5,808,207	+		PS417_26895	0.23	-0.2
5,808,207	+		PS417_26895	0.23	+0.5
5,808,207	+		PS417_26895	0.23	-1.2
5,808,208	-		PS417_26895	0.23	-0.6
5,808,208	-		PS417_26895	0.23	+1.0
5,808,262	-		PS417_26895	0.28	+0.2
5,808,262	-		PS417_26895	0.28	+0.9
5,808,402	+		PS417_26895	0.41	+0.7
5,808,461	+		PS417_26895	0.47	-0.5
5,808,461	+		PS417_26895	0.47	-0.5
5,808,461	+		PS417_26895	0.47	-1.2
5,808,461	+		PS417_26895	0.47	-0.9
5,808,461	+		PS417_26895	0.47	-0.1
5,808,462	-		PS417_26895	0.47	+0.3
5,808,462	-		PS417_26895	0.47	-0.5
5,808,462	-		PS417_26895	0.47	-0.2
5,808,462	-		PS417_26895	0.47	+0.8
5,808,465	+		PS417_26895	0.47	+0.1
5,808,465	+		PS417_26895	0.47	+0.1
5,808,465	+		PS417_26895	0.47	-0.6
5,808,465	+		PS417_26895	0.47	+0.5
5,808,465	+		PS417_26895	0.47	-0.5
5,808,466	-		PS417_26895	0.47	-0.1
5,808,466	-		PS417_26895	0.47	+0.0
5,808,466	-		PS417_26895	0.47	+0.4
5,808,466	-		PS417_26895	0.47	-0.3
5,808,706	-		PS417_26895	0.70	-2.8
5,808,706	-		PS417_26895	0.70	+0.4
5,808,708	+		PS417_26895	0.70	+0.1
5,808,754	+				-0.4
5,808,754	+		PS417_26895	0.75	+1.9