Experiment: Vogels_fungal_media; pH 5.5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_26730 and PS417_26735 are separated by 9 nucleotides PS417_26735 and PS417_26740 are separated by 207 nucleotides PS417_26740 and PS417_26745 are separated by 7 nucleotides PS417_26745 and PS417_26750 are separated by 21 nucleotides
PS417_26730: PS417_26730 - pyrroline-5-carboxylate reductase, at 5,776,531 to 5,777,349
_26730
PS417_26735: PS417_26735 - membrane protein, at 5,777,359 to 5,777,949
_26735
PS417_26740: PS417_26740 - homoserine acetyltransferase, at 5,778,157 to 5,779,296
_26740
PS417_26745: PS417_26745 - methionine biosynthesis protein MetW, at 5,779,304 to 5,779,924
_26745
PS417_26750: PS417_26750 - homoserine acetyltransferase, at 5,779,946 to 5,780,380
_26750
Position (kb) 5778
5779
5780 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 5777.347 kb on + strand at 5777.347 kb on + strand at 5777.947 kb on + strand at 5777.998 kb on + strand at 5777.998 kb on + strand at 5778.063 kb on - strand at 5778.122 kb on + strand at 5778.128 kb on + strand at 5778.128 kb on + strand at 5778.129 kb on - strand at 5778.129 kb on - strand at 5778.259 kb on + strand at 5778.271 kb on + strand, within PS417_26740 at 5778.271 kb on + strand, within PS417_26740 at 5778.272 kb on - strand, within PS417_26740 at 5778.272 kb on - strand, within PS417_26740 at 5778.665 kb on - strand, within PS417_26740 at 5778.850 kb on - strand, within PS417_26740 at 5778.856 kb on + strand, within PS417_26740 at 5778.856 kb on + strand, within PS417_26740 at 5778.856 kb on + strand, within PS417_26740 at 5778.857 kb on - strand, within PS417_26740 at 5778.955 kb on + strand, within PS417_26740 at 5779.033 kb on + strand, within PS417_26740 at 5779.196 kb on - strand at 5779.196 kb on - strand at 5779.252 kb on + strand at 5779.253 kb on - strand at 5779.273 kb on + strand at 5779.274 kb on - strand at 5779.709 kb on + strand, within PS417_26745 at 5779.719 kb on - strand, within PS417_26745 at 5779.719 kb on - strand, within PS417_26745 at 5779.719 kb on - strand, within PS417_26745 at 5779.719 kb on - strand, within PS417_26745 at 5779.841 kb on - strand, within PS417_26745 at 5779.845 kb on + strand, within PS417_26745 at 5779.845 kb on + strand, within PS417_26745 at 5779.845 kb on + strand, within PS417_26745 at 5779.845 kb on + strand, within PS417_26745 at 5779.922 kb on + strand at 5779.923 kb on - strand at 5780.012 kb on - strand, within PS417_26750 at 5780.013 kb on + strand, within PS417_26750 at 5780.013 kb on + strand, within PS417_26750 at 5780.014 kb on - strand, within PS417_26750 at 5780.057 kb on + strand, within PS417_26750 at 5780.058 kb on - strand, within PS417_26750 at 5780.115 kb on + strand, within PS417_26750
Per-strain Table
Position Strand Gene LocusTag Fraction Vogels_fungal_media; pH 5.5 remove 5,777,347 + +2.3 5,777,347 + -1.6 5,777,947 + -0.2 5,777,998 + -0.1 5,777,998 + -0.8 5,778,063 - -1.7 5,778,122 + -0.4 5,778,128 + +0.6 5,778,128 + +0.1 5,778,129 - -1.9 5,778,129 - -3.4 5,778,259 + +0.2 5,778,271 + PS417_26740 0.10 -2.2 5,778,271 + PS417_26740 0.10 -4.2 5,778,272 - PS417_26740 0.10 -1.7 5,778,272 - PS417_26740 0.10 -3.6 5,778,665 - PS417_26740 0.45 -2.8 5,778,850 - PS417_26740 0.61 -5.6 5,778,856 + PS417_26740 0.61 -4.2 5,778,856 + PS417_26740 0.61 -3.8 5,778,856 + PS417_26740 0.61 -2.9 5,778,857 - PS417_26740 0.61 -2.6 5,778,955 + PS417_26740 0.70 -3.4 5,779,033 + PS417_26740 0.77 -2.0 5,779,196 - -0.9 5,779,196 - -1.8 5,779,252 + -2.3 5,779,253 - -1.5 5,779,273 + -2.8 5,779,274 - -3.0 5,779,709 + PS417_26745 0.65 -2.3 5,779,719 - PS417_26745 0.67 -0.4 5,779,719 - PS417_26745 0.67 -4.8 5,779,719 - PS417_26745 0.67 -3.6 5,779,719 - PS417_26745 0.67 -2.4 5,779,841 - PS417_26745 0.86 +1.3 5,779,845 + PS417_26745 0.87 -2.1 5,779,845 + PS417_26745 0.87 -1.7 5,779,845 + PS417_26745 0.87 -2.5 5,779,845 + PS417_26745 0.87 -3.7 5,779,922 + -0.7 5,779,923 - +0.3 5,780,012 - PS417_26750 0.15 -0.1 5,780,013 + PS417_26750 0.15 +0.4 5,780,013 + PS417_26750 0.15 +0.3 5,780,014 - PS417_26750 0.16 -1.1 5,780,057 + PS417_26750 0.26 +0.2 5,780,058 - PS417_26750 0.26 +1.1 5,780,115 + PS417_26750 0.39 +0.2
Or see this region's nucleotide sequence