Strain Fitness in Pseudomonas simiae WCS417 around PS417_25390

Experiment: Vogels_fungal_media; pH 5.5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Vogels_fungal_media; pH 5.5
5,497,323	+				+1.2
5,497,323	+				-1.0
5,497,324	-				-0.7
5,497,324	-				+1.9
5,497,338	-				-0.2
5,497,355	+				+0.1
5,497,432	+				-0.6
5,497,432	+				-0.6
5,497,432	+				-0.1
5,497,432	+				+2.7
5,497,433	-				-0.3
5,497,433	-				-0.2
5,497,433	-				+0.5
5,497,442	+		PS417_25380	0.10	+0.4
5,497,508	+		PS417_25380	0.45	+0.8
5,497,523	-				+1.0
5,497,525	+		PS417_25380	0.54	+0.3
5,497,525	+		PS417_25380	0.54	+0.0
5,497,525	+		PS417_25380	0.54	+1.7
5,497,562	+		PS417_25380	0.73	-0.1
5,497,606	-				+0.7
5,497,620	+				-0.4
5,497,652	+				-1.3
5,497,652	+				+0.0
5,497,653	-				-1.3
5,497,655	+				+0.1
5,497,655	+				+0.4
5,497,655	+				-0.4
5,497,656	-				+0.1
5,497,695	+				+0.2
5,497,723	+				-0.1
5,497,724	-				+0.7
5,497,724	-				-0.0
5,497,727	+				+0.3
5,497,755	+				+0.3
5,497,756	-				-0.4
5,497,767	+				+0.3
5,497,768	-				-0.4
5,497,768	-				+0.4
5,498,381	-				-2.4
5,498,504	-		PS417_25390	0.15	-0.2
5,498,523	-		PS417_25390	0.16	-1.4
5,498,654	-		PS417_25390	0.26	+0.0
5,498,802	+		PS417_25390	0.36	-0.4
5,498,802	+		PS417_25390	0.36	-1.4
5,498,873	-		PS417_25390	0.41	+0.0
5,499,013	-		PS417_25390	0.51	-1.8
5,499,027	+		PS417_25390	0.52	-0.8
5,499,028	-		PS417_25390	0.52	-0.8
5,499,724	+				-1.3
5,499,724	+				-0.8
5,499,724	+				-0.4
5,499,748	+				-0.1
5,499,750	+				+1.2
5,499,750	+				+0.4
5,499,750	+				-0.1
5,499,750	+				-1.5
5,499,751	-				+0.3
5,499,751	-				-0.6
5,499,780	+				-0.2
5,499,780	+				+0.2
5,499,781	-				+0.5
5,499,781	-				-0.1
5,499,781	-				+0.0
5,499,781	-				-0.2
5,499,809	-				+0.1
5,499,810	+				-0.3
5,499,831	+				+2.0
5,499,832	-				-1.5
5,499,833	+				+1.1
5,499,833	+				+0.1
5,499,834	-				+0.5
5,499,834	-				+0.2
5,499,844	+				+0.8
5,499,845	-				+0.1
5,499,849	-				+0.0
5,499,898	-				-0.8
5,500,007	-				+0.1
5,500,189	+		PS417_25395	0.11	-0.1
5,500,190	-		PS417_25395	0.11	-0.6
5,500,190	-		PS417_25395	0.11	+0.4
5,500,204	+		PS417_25395	0.12	+0.6
5,500,205	-		PS417_25395	0.12	-0.5
5,500,205	-		PS417_25395	0.12	-0.1
5,500,218	+		PS417_25395	0.12	-0.8
5,500,394	+		PS417_25395	0.18	+0.0
5,500,394	+		PS417_25395	0.18	+1.1
5,500,420	+		PS417_25395	0.19	+0.2
5,500,420	+		PS417_25395	0.19	-0.2
5,500,420	+		PS417_25395	0.19	-0.1