Strain Fitness in Pseudomonas simiae WCS417 around PS417_25315

Experiment: Vogels_fungal_media; pH 5.5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Vogels_fungal_media; pH 5.5
5,480,047	+		PS417_25305	0.78	+0.9
5,480,048	-		PS417_25305	0.78	+0.8
5,480,048	-		PS417_25305	0.78	-0.4
5,480,048	-		PS417_25305	0.78	+2.0
5,480,067	-		PS417_25305	0.79	+1.3
5,480,139	+		PS417_25305	0.85	-0.3
5,480,140	-		PS417_25305	0.85	-0.1
5,480,320	+				-0.2
5,480,321	-				-0.2
5,480,738	+		PS417_25310	0.77	+0.3
5,480,739	-		PS417_25310	0.77	+0.0
5,480,739	-		PS417_25310	0.77	+0.5
5,480,747	+		PS417_25310	0.79	-0.0
5,480,837	+				-0.9
5,480,837	+				-0.4
5,480,837	+				-0.5
5,480,837	+				+0.6
5,480,837	+				+1.6
5,480,838	-				-0.4
5,480,838	-				-0.8
5,480,838	-				-0.9
5,480,920	-				-1.7
5,481,007	+				-0.3
5,481,007	+				-0.5
5,481,174	+		PS417_25315	0.32	+0.5
5,481,175	-		PS417_25315	0.32	-0.5
5,481,319	-		PS417_25315	0.53	-0.5
5,481,321	+		PS417_25315	0.53	-1.1
5,481,322	-		PS417_25315	0.53	+0.5
5,481,355	-		PS417_25315	0.58	+0.0
5,481,376	-		PS417_25315	0.61	-1.6
5,481,376	-		PS417_25315	0.61	-0.3
5,481,483	+		PS417_25315	0.76	-1.3
5,481,483	+		PS417_25315	0.76	-1.8
5,481,483	+		PS417_25315	0.76	-1.3
5,481,484	-		PS417_25315	0.77	+0.5
5,481,526	-		PS417_25315	0.83	-1.9
5,481,619	-				-0.9
5,481,619	-				-1.0
5,481,619	-				+1.1
5,481,646	-				-0.0
5,481,709	+				-0.6
5,481,893	+				+1.3
5,481,959	+		PS417_25320	0.28	+0.2
5,481,960	+		PS417_25320	0.29	+0.3
5,481,960	-		PS417_25320	0.29	+0.1
5,481,960	-		PS417_25320	0.29	-0.5
5,481,965	+		PS417_25320	0.29	-0.3
5,481,965	+		PS417_25320	0.29	+0.1
5,481,965	+				-1.4
5,481,965	+		PS417_25320	0.29	+0.1
5,481,966	-		PS417_25320	0.29	-0.1
5,482,256	+		PS417_25320	0.63	-0.2
5,482,257	-		PS417_25320	0.63	+0.2
5,482,412	+		PS417_25320	0.80	+0.5
5,482,413	-		PS417_25320	0.81	-0.4
5,482,581	+				+0.4
5,482,581	+				+0.6
5,482,581	+				-0.3
5,482,581	+				+0.8
5,482,581	+				-0.5
5,482,582	-				-0.1
5,482,582	-				+0.3
5,482,582	-				-0.1
5,482,582	-				-1.7
5,482,582	-				+0.1
5,482,582	-				-0.4
5,482,596	+				+0.4
5,482,597	-				+2.0
5,482,597	-				+1.5
5,482,632	+				-0.3
5,482,632	+				+0.1
5,482,635	+				+0.6
5,482,639	+				-0.3
5,482,639	+				-0.1
5,482,639	+				+0.5
5,482,639	+				+0.5
5,482,640	-				-0.4
5,482,640	-				-0.1
5,482,643	+				+0.7