Experiment: Vogels_fungal_media; pH 5.5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_25265 and PS417_25270 overlap by 4 nucleotides PS417_25270 and PS417_25275 are separated by 140 nucleotides PS417_25275 and PS417_25280 overlap by 4 nucleotides
PS417_25265: PS417_25265 - diaminohydroxyphosphoribosylaminopyrimidine deaminase, at 5,473,267 to 5,474,403
_25265
PS417_25270: PS417_25270 - NrdR family transcriptional regulator, at 5,474,400 to 5,474,864
_25270
PS417_25275: PS417_25275 - hypothetical protein, at 5,475,005 to 5,475,460
_25275
PS417_25280: PS417_25280 - methyltransferase, at 5,475,457 to 5,476,113
_25280
Position (kb) 5474
5475 Strain fitness (log2 ratio) -1
0
1 at 5474.495 kb on - strand, within PS417_25270 at 5474.495 kb on - strand, within PS417_25270 at 5474.495 kb on - strand, within PS417_25270 at 5474.495 kb on - strand, within PS417_25270 at 5474.495 kb on - strand, within PS417_25270 at 5474.725 kb on - strand, within PS417_25270 at 5474.883 kb on - strand at 5474.883 kb on - strand at 5474.883 kb on - strand at 5474.935 kb on - strand at 5474.939 kb on + strand at 5474.939 kb on + strand at 5474.940 kb on - strand at 5474.940 kb on - strand at 5474.941 kb on + strand at 5474.942 kb on - strand at 5474.942 kb on - strand at 5474.943 kb on + strand at 5474.943 kb on + strand at 5474.943 kb on + strand at 5474.943 kb on + strand at 5474.944 kb on - strand at 5474.944 kb on - strand at 5474.944 kb on - strand at 5474.944 kb on - strand at 5474.953 kb on - strand at 5474.955 kb on + strand at 5474.956 kb on - strand at 5474.956 kb on - strand at 5475.002 kb on + strand at 5475.002 kb on + strand at 5475.002 kb on + strand at 5475.003 kb on - strand at 5475.003 kb on - strand at 5475.003 kb on - strand at 5475.267 kb on + strand, within PS417_25275 at 5475.267 kb on + strand, within PS417_25275 at 5475.268 kb on - strand, within PS417_25275 at 5475.552 kb on - strand, within PS417_25280 at 5475.671 kb on - strand, within PS417_25280 at 5475.853 kb on + strand, within PS417_25280
Per-strain Table
Position Strand Gene LocusTag Fraction Vogels_fungal_media; pH 5.5 remove 5,474,495 - PS417_25270 0.20 -0.6 5,474,495 - PS417_25270 0.20 +0.1 5,474,495 - PS417_25270 0.20 -0.8 5,474,495 - PS417_25270 0.20 -1.6 5,474,495 - PS417_25270 0.20 -1.0 5,474,725 - PS417_25270 0.70 -0.5 5,474,883 - -0.2 5,474,883 - -0.6 5,474,883 - -0.6 5,474,935 - +1.2 5,474,939 + -0.1 5,474,939 + +0.0 5,474,940 - -1.0 5,474,940 - +0.1 5,474,941 + -0.3 5,474,942 - -0.3 5,474,942 - -0.3 5,474,943 + -0.7 5,474,943 + +0.7 5,474,943 + -1.3 5,474,943 + +0.6 5,474,944 - +0.0 5,474,944 - -0.8 5,474,944 - +0.2 5,474,944 - -0.6 5,474,953 - -0.2 5,474,955 + -1.4 5,474,956 - -0.5 5,474,956 - +0.1 5,475,002 + -0.1 5,475,002 + +0.4 5,475,002 + -0.5 5,475,003 - +0.4 5,475,003 - +0.2 5,475,003 - +0.5 5,475,267 + PS417_25275 0.57 +0.1 5,475,267 + PS417_25275 0.57 -0.4 5,475,268 - PS417_25275 0.58 +0.8 5,475,552 - PS417_25280 0.14 -0.8 5,475,671 - PS417_25280 0.33 -1.0 5,475,853 + PS417_25280 0.60 +0.2
Or see this region's nucleotide sequence