Strain Fitness in Pseudomonas simiae WCS417 around PS417_02510

Experiment: Vogels_fungal_media; pH 5.5

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_02505 and PS417_02510 are separated by 294 nucleotidesPS417_02510 and PS417_02515 are separated by 54 nucleotides PS417_02505: PS417_02505 - membane protease HflC, at 572,328 to 573,194 _02505 PS417_02510: PS417_02510 - ATP phosphoribosyltransferase regulatory subunit, at 573,489 to 574,676 _02510 PS417_02515: PS417_02515 - adenylosuccinate synthetase, at 574,731 to 576,020 _02515 Position (kb) 573 574 575Strain fitness (log2 ratio) -3 -2 -1 0 1at 573.192 kb on + strandat 573.192 kb on + strandat 573.211 kb on + strandat 573.274 kb on + strandat 573.274 kb on + strandat 573.274 kb on + strandat 573.274 kb on + strandat 573.410 kb on + strandat 573.487 kb on + strandat 573.535 kb on + strandat 573.993 kb on + strand, within PS417_02510at 574.057 kb on + strand, within PS417_02510at 574.057 kb on + strand, within PS417_02510at 574.278 kb on + strand, within PS417_02510at 574.657 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Vogels_fungal_media; pH 5.5
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573,192 + -1.1
573,192 + +0.4
573,211 + -1.3
573,274 + -0.8
573,274 + -0.3
573,274 + -0.4
573,274 + -0.7
573,410 + -0.4
573,487 + -1.2
573,535 + -2.8
573,993 + PS417_02510 0.42 -2.8
574,057 + PS417_02510 0.48 -2.0
574,057 + PS417_02510 0.48 -3.0
574,278 + PS417_02510 0.66 +0.8
574,657 + -1.1

Or see this region's nucleotide sequence