Strain Fitness in Pseudomonas simiae WCS417 around PS417_25075

Experiment: Vogels_fungal_media; pH 5.5

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_25070 and PS417_25075 overlap by 16 nucleotidesPS417_25075 and PS417_25080 are separated by 74 nucleotides PS417_25070: PS417_25070 - hypothetical protein, at 5,436,585 to 5,437,670 _25070 PS417_25075: PS417_25075 - hypothetical protein, at 5,437,655 to 5,438,221 _25075 PS417_25080: PS417_25080 - hypothetical protein, at 5,438,296 to 5,439,393 _25080 Position (kb) 5437 5438 5439Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 5436.736 kb on + strand, within PS417_25070at 5436.736 kb on + strand, within PS417_25070at 5436.737 kb on - strand, within PS417_25070at 5436.737 kb on - strand, within PS417_25070at 5436.737 kb on - strand, within PS417_25070at 5436.749 kb on - strand, within PS417_25070at 5436.773 kb on - strand, within PS417_25070at 5436.881 kb on - strand, within PS417_25070at 5436.881 kb on - strand, within PS417_25070at 5436.884 kb on - strand, within PS417_25070at 5436.884 kb on - strand, within PS417_25070at 5436.924 kb on + strand, within PS417_25070at 5436.924 kb on + strand, within PS417_25070at 5436.924 kb on + strand, within PS417_25070at 5436.924 kb on + strand, within PS417_25070at 5436.924 kb on + strand, within PS417_25070at 5436.924 kb on + strand, within PS417_25070at 5436.925 kb on - strand, within PS417_25070at 5436.925 kb on - strand, within PS417_25070at 5436.925 kb on - strandat 5436.925 kb on - strand, within PS417_25070at 5437.001 kb on + strand, within PS417_25070at 5437.001 kb on + strand, within PS417_25070at 5437.002 kb on - strand, within PS417_25070at 5437.002 kb on - strand, within PS417_25070at 5437.029 kb on + strand, within PS417_25070at 5437.029 kb on + strand, within PS417_25070at 5437.029 kb on + strand, within PS417_25070at 5437.029 kb on + strand, within PS417_25070at 5437.029 kb on + strand, within PS417_25070at 5437.030 kb on - strand, within PS417_25070at 5437.032 kb on + strand, within PS417_25070at 5437.032 kb on + strand, within PS417_25070at 5437.032 kb on + strand, within PS417_25070at 5437.173 kb on - strand, within PS417_25070at 5437.250 kb on - strand, within PS417_25070at 5437.250 kb on - strand, within PS417_25070at 5437.259 kb on + strand, within PS417_25070at 5437.300 kb on - strand, within PS417_25070at 5437.300 kb on - strand, within PS417_25070at 5437.345 kb on + strandat 5437.346 kb on - strand, within PS417_25070at 5437.379 kb on + strandat 5437.380 kb on - strand, within PS417_25070at 5437.401 kb on + strand, within PS417_25070at 5437.445 kb on - strand, within PS417_25070at 5437.504 kb on - strand, within PS417_25070at 5437.504 kb on - strand, within PS417_25070at 5437.548 kb on + strand, within PS417_25070at 5437.650 kb on + strandat 5437.656 kb on + strandat 5437.656 kb on + strandat 5437.657 kb on - strandat 5437.739 kb on + strand, within PS417_25075at 5437.739 kb on + strandat 5437.740 kb on - strand, within PS417_25075at 5437.741 kb on + strand, within PS417_25075at 5437.741 kb on + strand, within PS417_25075at 5437.741 kb on + strand, within PS417_25075at 5437.741 kb on + strand, within PS417_25075at 5437.742 kb on - strand, within PS417_25075at 5437.742 kb on - strand, within PS417_25075at 5437.742 kb on - strand, within PS417_25075at 5437.742 kb on - strand, within PS417_25075at 5437.742 kb on - strand, within PS417_25075at 5437.742 kb on - strand, within PS417_25075at 5437.742 kb on - strand, within PS417_25075at 5437.754 kb on + strand, within PS417_25075at 5437.855 kb on + strand, within PS417_25075at 5437.856 kb on - strand, within PS417_25075at 5437.856 kb on - strand, within PS417_25075at 5437.856 kb on - strand, within PS417_25075at 5438.017 kb on - strandat 5438.221 kb on + strandat 5438.221 kb on + strandat 5438.492 kb on + strand, within PS417_25080at 5438.492 kb on + strand, within PS417_25080at 5438.492 kb on + strand, within PS417_25080at 5438.492 kb on + strand, within PS417_25080at 5438.493 kb on - strand, within PS417_25080at 5438.573 kb on - strand, within PS417_25080at 5438.573 kb on - strand, within PS417_25080at 5438.710 kb on - strand, within PS417_25080at 5438.734 kb on + strand, within PS417_25080at 5438.782 kb on + strand, within PS417_25080at 5438.788 kb on + strand, within PS417_25080at 5438.788 kb on + strand, within PS417_25080at 5438.788 kb on + strand, within PS417_25080at 5438.789 kb on - strand, within PS417_25080at 5438.790 kb on + strand, within PS417_25080at 5438.798 kb on - strand, within PS417_25080at 5438.901 kb on - strand, within PS417_25080at 5439.022 kb on + strand, within PS417_25080at 5439.023 kb on - strand, within PS417_25080

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Per-strain Table

Position Strand Gene LocusTag Fraction Vogels_fungal_media; pH 5.5
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5,436,736 + PS417_25070 0.14 +0.2
5,436,736 + PS417_25070 0.14 +0.5
5,436,737 - PS417_25070 0.14 +0.3
5,436,737 - PS417_25070 0.14 -1.6
5,436,737 - PS417_25070 0.14 -0.6
5,436,749 - PS417_25070 0.15 +1.0
5,436,773 - PS417_25070 0.17 +0.3
5,436,881 - PS417_25070 0.27 +0.6
5,436,881 - PS417_25070 0.27 +1.0
5,436,884 - PS417_25070 0.28 +0.5
5,436,884 - PS417_25070 0.28 -0.2
5,436,924 + PS417_25070 0.31 -0.8
5,436,924 + PS417_25070 0.31 +0.1
5,436,924 + PS417_25070 0.31 -1.6
5,436,924 + PS417_25070 0.31 -0.2
5,436,924 + PS417_25070 0.31 -0.9
5,436,924 + PS417_25070 0.31 +0.0
5,436,925 - PS417_25070 0.31 -0.0
5,436,925 - PS417_25070 0.31 +0.0
5,436,925 - -1.7
5,436,925 - PS417_25070 0.31 +0.4
5,437,001 + PS417_25070 0.38 +1.0
5,437,001 + PS417_25070 0.38 +1.0
5,437,002 - PS417_25070 0.38 +0.7
5,437,002 - PS417_25070 0.38 +0.5
5,437,029 + PS417_25070 0.41 +0.3
5,437,029 + PS417_25070 0.41 -1.6
5,437,029 + PS417_25070 0.41 -0.2
5,437,029 + PS417_25070 0.41 -0.6
5,437,029 + PS417_25070 0.41 +0.0
5,437,030 - PS417_25070 0.41 -0.6
5,437,032 + PS417_25070 0.41 +0.2
5,437,032 + PS417_25070 0.41 +0.9
5,437,032 + PS417_25070 0.41 -1.8
5,437,173 - PS417_25070 0.54 -1.6
5,437,250 - PS417_25070 0.61 -0.2
5,437,250 - PS417_25070 0.61 -0.3
5,437,259 + PS417_25070 0.62 +0.4
5,437,300 - PS417_25070 0.66 -0.8
5,437,300 - PS417_25070 0.66 +0.0
5,437,345 + -0.3
5,437,346 - PS417_25070 0.70 +0.1
5,437,379 + -1.3
5,437,380 - PS417_25070 0.73 +0.0
5,437,401 + PS417_25070 0.75 +0.3
5,437,445 - PS417_25070 0.79 +0.3
5,437,504 - PS417_25070 0.85 +0.4
5,437,504 - PS417_25070 0.85 -1.0
5,437,548 + PS417_25070 0.89 +0.1
5,437,650 + -0.1
5,437,656 + -0.1
5,437,656 + -0.3
5,437,657 - +0.3
5,437,739 + PS417_25075 0.15 +2.0
5,437,739 + -3.6
5,437,740 - PS417_25075 0.15 +0.0
5,437,741 + PS417_25075 0.15 -0.7
5,437,741 + PS417_25075 0.15 +0.7
5,437,741 + PS417_25075 0.15 +0.9
5,437,741 + PS417_25075 0.15 +0.9
5,437,742 - PS417_25075 0.15 -0.2
5,437,742 - PS417_25075 0.15 +0.1
5,437,742 - PS417_25075 0.15 -0.2
5,437,742 - PS417_25075 0.15 +1.7
5,437,742 - PS417_25075 0.15 +0.1
5,437,742 - PS417_25075 0.15 +1.3
5,437,742 - PS417_25075 0.15 +0.5
5,437,754 + PS417_25075 0.17 -0.1
5,437,855 + PS417_25075 0.35 +0.1
5,437,856 - PS417_25075 0.35 +0.2
5,437,856 - PS417_25075 0.35 +0.5
5,437,856 - PS417_25075 0.35 -0.3
5,438,017 - -0.3
5,438,221 + +0.5
5,438,221 + +0.5
5,438,492 + PS417_25080 0.18 +0.3
5,438,492 + PS417_25080 0.18 +0.4
5,438,492 + PS417_25080 0.18 +0.2
5,438,492 + PS417_25080 0.18 -0.0
5,438,493 - PS417_25080 0.18 -0.6
5,438,573 - PS417_25080 0.25 +0.5
5,438,573 - PS417_25080 0.25 -0.6
5,438,710 - PS417_25080 0.38 -0.6
5,438,734 + PS417_25080 0.40 +0.2
5,438,782 + PS417_25080 0.44 -0.3
5,438,788 + PS417_25080 0.45 -0.6
5,438,788 + PS417_25080 0.45 -0.5
5,438,788 + PS417_25080 0.45 +0.5
5,438,789 - PS417_25080 0.45 +0.5
5,438,790 + PS417_25080 0.45 +0.2
5,438,798 - PS417_25080 0.46 +0.1
5,438,901 - PS417_25080 0.55 +0.0
5,439,022 + PS417_25080 0.66 -0.9
5,439,023 - PS417_25080 0.66 -0.3

Or see this region's nucleotide sequence