Experiment: Vogels_fungal_media; pH 5.5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_24305 and PS417_24310 are separated by 35 nucleotides PS417_24310 and PS417_24315 are separated by 58 nucleotides
PS417_24305: PS417_24305 - DNA repair protein RadA, at 5,275,394 to 5,276,761
_24305
PS417_24310: PS417_24310 - ankyrin, at 5,276,797 to 5,277,336
_24310
PS417_24315: PS417_24315 - catalase, at 5,277,395 to 5,278,936
_24315
Position (kb) 5276
5277
5278 Strain fitness (log2 ratio) -2
-1
0
1 at 5275.846 kb on + strand, within PS417_24305 at 5275.847 kb on - strand, within PS417_24305 at 5276.050 kb on - strand, within PS417_24305 at 5276.063 kb on + strand, within PS417_24305 at 5276.064 kb on - strand, within PS417_24305 at 5276.155 kb on - strand, within PS417_24305 at 5276.394 kb on + strand, within PS417_24305 at 5276.394 kb on + strand, within PS417_24305 at 5276.394 kb on + strand, within PS417_24305 at 5276.394 kb on + strand, within PS417_24305 at 5276.394 kb on + strand, within PS417_24305 at 5276.395 kb on - strand, within PS417_24305 at 5276.435 kb on + strand, within PS417_24305 at 5276.436 kb on - strand, within PS417_24305 at 5276.689 kb on + strand at 5276.739 kb on + strand at 5276.739 kb on + strand at 5276.739 kb on + strand at 5276.739 kb on + strand at 5276.739 kb on + strand at 5276.793 kb on + strand at 5276.794 kb on - strand at 5276.794 kb on - strand at 5276.934 kb on - strand, within PS417_24310 at 5277.146 kb on + strand, within PS417_24310 at 5277.146 kb on + strand, within PS417_24310 at 5277.176 kb on + strand, within PS417_24310 at 5277.472 kb on - strand at 5277.489 kb on + strand at 5277.489 kb on + strand at 5277.723 kb on + strand, within PS417_24315 at 5277.724 kb on - strand, within PS417_24315 at 5277.838 kb on - strand, within PS417_24315 at 5278.083 kb on + strand, within PS417_24315 at 5278.083 kb on + strand, within PS417_24315 at 5278.083 kb on + strand, within PS417_24315 at 5278.084 kb on - strand, within PS417_24315 at 5278.084 kb on - strand, within PS417_24315
Per-strain Table
Position Strand Gene LocusTag Fraction Vogels_fungal_media; pH 5.5 remove 5,275,846 + PS417_24305 0.33 -0.1 5,275,847 - PS417_24305 0.33 +0.4 5,276,050 - PS417_24305 0.48 +0.5 5,276,063 + PS417_24305 0.49 +0.7 5,276,064 - PS417_24305 0.49 +1.0 5,276,155 - PS417_24305 0.56 +0.2 5,276,394 + PS417_24305 0.73 -0.2 5,276,394 + PS417_24305 0.73 +0.0 5,276,394 + PS417_24305 0.73 +1.0 5,276,394 + PS417_24305 0.73 -0.2 5,276,394 + PS417_24305 0.73 -0.8 5,276,395 - PS417_24305 0.73 -0.0 5,276,435 + PS417_24305 0.76 +0.6 5,276,436 - PS417_24305 0.76 +1.1 5,276,689 + +1.0 5,276,739 + +0.4 5,276,739 + -2.0 5,276,739 + -0.4 5,276,739 + -0.1 5,276,739 + -1.5 5,276,793 + -0.3 5,276,794 - -0.5 5,276,794 - -0.4 5,276,934 - PS417_24310 0.25 -1.2 5,277,146 + PS417_24310 0.65 -1.2 5,277,146 + PS417_24310 0.65 -0.3 5,277,176 + PS417_24310 0.70 -0.4 5,277,472 - +0.4 5,277,489 + +0.3 5,277,489 + +0.4 5,277,723 + PS417_24315 0.21 -0.6 5,277,724 - PS417_24315 0.21 +0.1 5,277,838 - PS417_24315 0.29 +0.3 5,278,083 + PS417_24315 0.45 +0.2 5,278,083 + PS417_24315 0.45 -0.3 5,278,083 + PS417_24315 0.45 -0.2 5,278,084 - PS417_24315 0.45 -2.3 5,278,084 - PS417_24315 0.45 -0.2
Or see this region's nucleotide sequence