Strain Fitness in Pseudomonas simiae WCS417 around PS417_23805

Experiment: Vogels_fungal_media; pH 5.5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Vogels_fungal_media; pH 5.5
5,150,404	-				-2.9
5,150,465	+		PS417_23800	0.16	-1.6
5,150,465	+		PS417_23800	0.16	-1.6
5,150,547	-		PS417_23800	0.24	-4.0
5,150,547	-		PS417_23800	0.24	-0.9
5,150,579	+		PS417_23800	0.27	-2.4
5,150,606	+		PS417_23800	0.30	-2.3
5,150,607	-		PS417_23800	0.30	-1.6
5,150,607	-		PS417_23800	0.30	-3.4
5,150,607	-		PS417_23800	0.30	-2.7
5,150,651	+		PS417_23800	0.34	-1.9
5,150,822	+		PS417_23800	0.51	-1.5
5,150,834	-		PS417_23800	0.52	-1.7
5,150,834	-		PS417_23800	0.52	-3.3
5,150,864	+		PS417_23800	0.55	-2.9
5,150,984	+		PS417_23800	0.67	-5.0
5,150,984	+		PS417_23800	0.67	-4.2
5,150,985	-		PS417_23800	0.67	-2.6
5,151,056	+		PS417_23800	0.74	-3.1
5,151,057	-		PS417_23800	0.74	-3.6
5,151,196	+		PS417_23800	0.88	-2.5
5,151,196	+		PS417_23800	0.88	-4.4
5,151,196	+		PS417_23800	0.88	-3.4
5,151,197	-		PS417_23800	0.88	-3.4
5,151,311	+				-4.7
5,151,332	+				-3.3
5,151,332	+				-4.6
5,151,332	+				-3.7
5,151,333	-				+0.1
5,151,333	-				+0.7
5,151,333	-				-1.2
5,151,333	-				-2.6
5,151,333	-				-0.7
5,151,333	-				-0.1
5,151,334	+				-3.2
5,151,334	+				-3.4
5,151,334	+				-3.9
5,151,334	+				-1.7
5,151,334	+				-2.7
5,151,334	+				-0.9
5,151,334	+				-2.4
5,151,335	-				-1.8
5,151,335	-				-0.8
5,151,335	-				+0.6
5,151,336	+				-5.3
5,151,371	-				-0.6
5,151,382	-				-0.5
5,151,500	+		PS417_23805	0.27	-2.3
5,151,500	+		PS417_23805	0.27	-4.3
5,151,502	+		PS417_23805	0.27	-4.2
5,151,538	+		PS417_23805	0.34	-4.4
5,151,713	+		PS417_23805	0.70	-1.8
5,151,713	+		PS417_23805	0.70	-1.0
5,151,778	+		PS417_23805	0.83	-4.7
5,151,848	+				-2.1
5,151,848	+				+0.1
5,151,849	-				-1.3
5,151,864	+				-0.5
5,151,868	+				-5.4
5,151,868	+				-3.8
5,151,868	+				-1.7
5,151,869	-				-4.4
5,151,892	+				-4.3
5,151,892	+				-4.5
5,151,893	-				-4.3
5,151,902	-				-4.4
5,151,902	-				-1.9
5,152,050	+		PS417_23810	0.11	-2.6
5,152,051	-		PS417_23810	0.11	-2.3
5,152,051	-		PS417_23810	0.11	-3.7
5,152,051	-		PS417_23810	0.11	-3.5
5,152,051	-		PS417_23810	0.11	-2.1
5,152,092	+		PS417_23810	0.13	-2.1
5,152,093	-		PS417_23810	0.13	+0.5
5,152,093	-		PS417_23810	0.13	-2.5
5,152,116	+		PS417_23810	0.15	-5.5
5,152,117	-		PS417_23810	0.15	-2.0
5,152,191	+		PS417_23810	0.19	-2.3
5,152,365	+		PS417_23810	0.29	-4.6
5,152,365	+		PS417_23810	0.29	-1.8
5,152,365	+		PS417_23810	0.29	-2.6
5,152,368	+		PS417_23810	0.29	-5.2
5,152,368	+		PS417_23810	0.29	-3.9
5,152,368	+		PS417_23810	0.29	-3.3
5,152,368	+		PS417_23810	0.29	-3.5
5,152,492	-		PS417_23810	0.36	-4.2
5,152,625	+		PS417_23810	0.44	-3.4
5,152,625	+		PS417_23810	0.44	-1.1
5,152,626	-		PS417_23810	0.44	-2.2
5,152,626	-		PS417_23810	0.44	-2.3
5,152,798	-		PS417_23810	0.54	-3.9