Experiment: Vogels_fungal_media; pH 5.5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_02360 and PS417_02365 overlap by 32 nucleotides PS417_02365 and PS417_02370 are separated by 193 nucleotides PS417_02370 and PS417_02375 overlap by 10 nucleotides
PS417_02360: PS417_02360 - nitrate reductase, at 540,437 to 541,726
_02360
PS417_02365: PS417_02365 - hypothetical protein, at 541,695 to 542,441
_02365
PS417_02370: PS417_02370 - ADP-ribose pyrophosphatase, at 542,635 to 543,252
_02370
PS417_02375: PS417_02375 - hypothetical protein, at 543,243 to 543,692
_02375
Position (kb) 541
542
543 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 540.871 kb on - strand, within PS417_02360 at 540.871 kb on - strand, within PS417_02360 at 541.211 kb on + strand, within PS417_02360 at 541.780 kb on + strand, within PS417_02365 at 541.781 kb on - strand, within PS417_02365 at 542.008 kb on + strand, within PS417_02365 at 542.060 kb on - strand, within PS417_02365 at 542.103 kb on + strand, within PS417_02365 at 542.363 kb on - strand, within PS417_02365 at 542.363 kb on - strand, within PS417_02365 at 542.463 kb on - strand at 542.516 kb on - strand at 542.635 kb on - strand at 542.707 kb on + strand, within PS417_02370 at 542.708 kb on - strand, within PS417_02370 at 543.220 kb on - strand at 543.251 kb on - strand at 543.312 kb on + strand, within PS417_02375 at 543.312 kb on + strand, within PS417_02375 at 543.313 kb on - strand, within PS417_02375 at 543.435 kb on + strand, within PS417_02375
Per-strain Table
Position Strand Gene LocusTag Fraction Vogels_fungal_media; pH 5.5 remove 540,871 - PS417_02360 0.34 -1.2 540,871 - PS417_02360 0.34 -1.4 541,211 + PS417_02360 0.60 +0.2 541,780 + PS417_02365 0.11 -0.1 541,781 - PS417_02365 0.12 -1.1 542,008 + PS417_02365 0.42 -0.7 542,060 - PS417_02365 0.49 -1.1 542,103 + PS417_02365 0.55 +1.2 542,363 - PS417_02365 0.89 -1.1 542,363 - PS417_02365 0.89 -3.8 542,463 - -2.0 542,516 - -0.3 542,635 - -0.4 542,707 + PS417_02370 0.12 -0.4 542,708 - PS417_02370 0.12 -0.5 543,220 - -0.3 543,251 - -0.6 543,312 + PS417_02375 0.15 +0.3 543,312 + PS417_02375 0.15 +0.5 543,313 - PS417_02375 0.16 +1.5 543,435 + PS417_02375 0.43 +0.5
Or see this region's nucleotide sequence