Experiment: Vogels_fungal_media; pH 5.5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_23100 and PS417_23105 are separated by 103 nucleotides PS417_23105 and PS417_23110 overlap by 8 nucleotides PS417_23110 and PS417_23115 are separated by 176 nucleotides PS417_23115 and PS417_23120 overlap by 13 nucleotides
PS417_23100: PS417_23100 - peptidase M23, at 5,007,620 to 5,008,441
_23100
PS417_23105: PS417_23105 - hypothetical protein, at 5,008,545 to 5,008,772
_23105
PS417_23110: PS417_23110 - 2-isopropylmalate synthase, at 5,008,765 to 5,010,444
_23110
PS417_23115: PS417_23115 - carbon-nitrogen hydrolase, at 5,010,621 to 5,011,412
_23115
PS417_23120: PS417_23120 - aminotransferase, at 5,011,400 to 5,012,548
_23120
Position (kb) 5008
5009
5010
5011 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1
2 at 5007.863 kb on - strand, within PS417_23100 at 5007.863 kb on - strand, within PS417_23100 at 5007.903 kb on - strand, within PS417_23100 at 5008.013 kb on + strand, within PS417_23100 at 5008.211 kb on + strand, within PS417_23100 at 5008.211 kb on + strand, within PS417_23100 at 5008.212 kb on - strand, within PS417_23100 at 5008.212 kb on - strand, within PS417_23100 at 5008.369 kb on + strand at 5008.695 kb on + strand, within PS417_23105 at 5008.746 kb on + strand, within PS417_23105 at 5008.795 kb on + strand at 5009.106 kb on + strand, within PS417_23110 at 5009.106 kb on + strand, within PS417_23110 at 5009.152 kb on + strand, within PS417_23110 at 5009.152 kb on + strand, within PS417_23110 at 5009.434 kb on + strand, within PS417_23110 at 5009.434 kb on + strand, within PS417_23110 at 5009.434 kb on + strand, within PS417_23110 at 5009.435 kb on - strand, within PS417_23110 at 5009.435 kb on - strand, within PS417_23110 at 5009.435 kb on - strand, within PS417_23110 at 5009.466 kb on + strand, within PS417_23110 at 5009.466 kb on + strand, within PS417_23110 at 5009.641 kb on + strand at 5009.641 kb on + strand, within PS417_23110 at 5009.641 kb on + strand, within PS417_23110 at 5009.642 kb on - strand, within PS417_23110 at 5009.642 kb on - strand, within PS417_23110 at 5009.642 kb on - strand, within PS417_23110 at 5009.642 kb on - strand, within PS417_23110 at 5010.050 kb on - strand, within PS417_23110 at 5010.070 kb on + strand, within PS417_23110 at 5010.084 kb on + strand, within PS417_23110 at 5010.259 kb on + strand, within PS417_23110 at 5010.259 kb on + strand, within PS417_23110 at 5010.259 kb on + strand, within PS417_23110 at 5010.308 kb on - strand at 5010.458 kb on + strand at 5010.502 kb on - strand at 5010.561 kb on + strand at 5010.638 kb on + strand at 5010.829 kb on + strand, within PS417_23115 at 5010.829 kb on + strand, within PS417_23115 at 5010.965 kb on - strand, within PS417_23115 at 5011.174 kb on + strand, within PS417_23115 at 5011.175 kb on - strand, within PS417_23115 at 5011.216 kb on + strand, within PS417_23115 at 5011.412 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Vogels_fungal_media; pH 5.5 remove 5,007,863 - PS417_23100 0.30 -0.6 5,007,863 - PS417_23100 0.30 -0.9 5,007,903 - PS417_23100 0.34 -0.4 5,008,013 + PS417_23100 0.48 +2.5 5,008,211 + PS417_23100 0.72 +0.7 5,008,211 + PS417_23100 0.72 +0.1 5,008,212 - PS417_23100 0.72 +0.3 5,008,212 - PS417_23100 0.72 +0.9 5,008,369 + -0.1 5,008,695 + PS417_23105 0.66 -0.6 5,008,746 + PS417_23105 0.88 -0.8 5,008,795 + -5.2 5,009,106 + PS417_23110 0.20 -4.0 5,009,106 + PS417_23110 0.20 -3.0 5,009,152 + PS417_23110 0.23 -1.4 5,009,152 + PS417_23110 0.23 -1.7 5,009,434 + PS417_23110 0.40 -3.0 5,009,434 + PS417_23110 0.40 -6.7 5,009,434 + PS417_23110 0.40 -3.2 5,009,435 - PS417_23110 0.40 -2.6 5,009,435 - PS417_23110 0.40 -2.6 5,009,435 - PS417_23110 0.40 -2.3 5,009,466 + PS417_23110 0.42 -4.3 5,009,466 + PS417_23110 0.42 -3.0 5,009,641 + -0.9 5,009,641 + PS417_23110 0.52 -3.7 5,009,641 + PS417_23110 0.52 -4.2 5,009,642 - PS417_23110 0.52 -2.7 5,009,642 - PS417_23110 0.52 -2.1 5,009,642 - PS417_23110 0.52 -1.2 5,009,642 - PS417_23110 0.52 -0.2 5,010,050 - PS417_23110 0.76 -2.7 5,010,070 + PS417_23110 0.78 -3.1 5,010,084 + PS417_23110 0.79 +0.1 5,010,259 + PS417_23110 0.89 -0.8 5,010,259 + PS417_23110 0.89 -0.2 5,010,259 + PS417_23110 0.89 -0.3 5,010,308 - -2.4 5,010,458 + -0.2 5,010,502 - +0.1 5,010,561 + +0.2 5,010,638 + +0.3 5,010,829 + PS417_23115 0.26 -0.2 5,010,829 + PS417_23115 0.26 +0.2 5,010,965 - PS417_23115 0.43 -0.4 5,011,174 + PS417_23115 0.70 -0.2 5,011,175 - PS417_23115 0.70 -0.2 5,011,216 + PS417_23115 0.75 +0.2 5,011,412 + -0.3
Or see this region's nucleotide sequence