Experiment: Vogels_fungal_media; pH 5.5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_22435 and PS417_22440 are separated by 1 nucleotides PS417_22440 and PS417_22445 are separated by 139 nucleotides PS417_22445 and PS417_22450 are separated by 0 nucleotides PS417_22450 and PS417_22455 are separated by 67 nucleotides
PS417_22435: PS417_22435 - protein tolQ, at 4,859,438 to 4,860,133
_22435
PS417_22440: PS417_22440 - 4-hydroxybenzoyl-CoA thioesterase, at 4,860,135 to 4,860,590
_22440
PS417_22445: PS417_22445 - ATP-dependent DNA helicase RuvB, at 4,860,730 to 4,861,788
_22445
PS417_22450: PS417_22450 - ATP-dependent DNA helicase RuvA, at 4,861,789 to 4,862,400
_22450
PS417_22455: PS417_22455 - crossover junction endodeoxyribonuclease RuvC, at 4,862,468 to 4,862,992
_22455
Position (kb) 4860
4861
4862 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 4860.193 kb on - strand, within PS417_22440 at 4860.591 kb on - strand at 4860.591 kb on - strand at 4860.603 kb on - strand at 4860.703 kb on + strand at 4860.708 kb on + strand at 4860.709 kb on - strand at 4861.122 kb on + strand, within PS417_22445 at 4861.233 kb on + strand, within PS417_22445 at 4861.243 kb on + strand, within PS417_22445 at 4861.452 kb on + strand, within PS417_22445 at 4861.694 kb on + strand at 4862.220 kb on - strand, within PS417_22450 at 4862.220 kb on - strand, within PS417_22450 at 4862.324 kb on + strand, within PS417_22450 at 4862.466 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Vogels_fungal_media; pH 5.5 remove 4,860,193 - PS417_22440 0.13 +1.0 4,860,591 - +1.3 4,860,591 - -0.3 4,860,603 - +0.6 4,860,703 + -0.7 4,860,708 + -0.1 4,860,709 - -3.1 4,861,122 + PS417_22445 0.37 -2.3 4,861,233 + PS417_22445 0.47 -1.0 4,861,243 + PS417_22445 0.48 -2.8 4,861,452 + PS417_22445 0.68 -2.2 4,861,694 + -0.3 4,862,220 - PS417_22450 0.70 +0.1 4,862,220 - PS417_22450 0.70 -1.4 4,862,324 + PS417_22450 0.87 -0.4 4,862,466 + -0.7
Or see this region's nucleotide sequence