Strain Fitness in Pseudomonas simiae WCS417 around PS417_22385

Experiment: Vogels_fungal_media; pH 5.5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Vogels_fungal_media; pH 5.5
4,849,347	-				+0.2
4,849,355	+				-0.3
4,849,355	+				-0.4
4,849,355	+				-0.4
4,849,356	-				+0.4
4,849,356	-				-0.3
4,849,356	-				+0.4
4,849,356	-				+0.4
4,849,364	+				+0.3
4,849,364	+				+1.2
4,849,364	+				+0.2
4,849,364	+				+0.1
4,849,364	+				+0.1
4,849,364	+				+0.3
4,849,365	-				+0.1
4,849,365	-				-0.4
4,849,365	-				-0.8
4,849,385	+				+0.8
4,849,457	+				+0.8
4,849,523	+		PS417_22375	0.28	+0.5
4,849,660	+				-0.4
4,849,724	+				+0.9
4,849,740	+				-0.1
4,849,740	+				-0.5
4,849,847	+		PS417_22380	0.15	+0.2
4,849,847	+		PS417_22380	0.15	+0.8
4,849,848	-		PS417_22380	0.16	+0.5
4,849,895	+		PS417_22380	0.25	-1.7
4,850,170	+		PS417_22380	0.81	+0.3
4,850,216	+				-1.6
4,850,216	+				+2.8
4,850,258	+				+0.5
4,850,440	+		PS417_22385	0.10	-0.2
4,850,440	+		PS417_22385	0.10	-2.1
4,850,441	-		PS417_22385	0.10	-1.4
4,850,670	-		PS417_22385	0.32	-1.7
4,850,670	-		PS417_22385	0.32	-1.3
4,850,670	-		PS417_22385	0.32	-1.3
4,850,838	+		PS417_22385	0.48	-1.9
4,850,838	+		PS417_22385	0.48	-2.2
4,850,839	-		PS417_22385	0.48	-0.8
4,850,839	-		PS417_22385	0.48	-1.4
4,850,839	-		PS417_22385	0.48	-1.8
4,850,839	-		PS417_22385	0.48	-2.5
4,850,869	+		PS417_22385	0.51	-1.4
4,850,973	+		PS417_22385	0.60	-1.1
4,850,973	+		PS417_22385	0.60	-0.3
4,850,973	+		PS417_22385	0.60	+1.2
4,850,973	+		PS417_22385	0.60	-2.2
4,850,974	-		PS417_22385	0.61	-2.2
4,850,974	-		PS417_22385	0.61	+0.2
4,851,243	+		PS417_22385	0.86	-4.0
4,851,243	+		PS417_22385	0.86	-1.7
4,851,243	+		PS417_22385	0.86	+0.7
4,851,244	-		PS417_22385	0.86	-1.9
4,851,244	-		PS417_22385	0.86	-3.0
4,851,433	+				-0.1
4,851,433	+				-0.6
4,851,433	+				-1.6
4,851,547	+				-0.1
4,851,547	+				+0.4
4,851,749	+				+0.7
4,851,749	+				-0.3
4,851,750	-				+0.2
4,851,800	+		PS417_22390	0.11	-1.0
4,851,800	+		PS417_22390	0.11	-1.2
4,851,801	-		PS417_22390	0.11	-1.1
4,851,899	+		PS417_22390	0.17	-0.3
4,851,944	+		PS417_22390	0.20	+0.1
4,851,944	+		PS417_22390	0.20	+0.2
4,851,945	-		PS417_22390	0.20	-0.4
4,851,950	+		PS417_22390	0.20	-0.2
4,851,950	+		PS417_22390	0.20	-0.3
4,851,951	-		PS417_22390	0.21	-0.6
4,851,951	-		PS417_22390	0.21	+0.1
4,852,068	+		PS417_22390	0.28	+0.0
4,852,103	+		PS417_22390	0.30	+0.7
4,852,104	-		PS417_22390	0.30	-0.5
4,852,350	-		PS417_22390	0.46	-0.1
4,852,350	-		PS417_22390	0.46	+0.1
4,852,350	-		PS417_22390	0.46	-0.0