Experiment: Vogels_fungal_media; pH 5.5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_02065 and PS417_02070 overlap by 11 nucleotides PS417_02070 and PS417_02075 are separated by 29 nucleotides PS417_02075 and PS417_02080 overlap by 8 nucleotides
PS417_02065: PS417_02065 - membrane protein, at 462,463 to 464,775
_02065
PS417_02070: PS417_02070 - membrane protein, at 464,765 to 465,427
_02070
PS417_02075: PS417_02075 - thioesterase, at 465,457 to 465,882
_02075
PS417_02080: PS417_02080 - histidine ammonia-lyase, at 465,875 to 467,416
_02080
Position (kb) 464
465
466 Strain fitness (log2 ratio) -1
0
1 at 463.811 kb on + strand, within PS417_02065 at 463.812 kb on - strand, within PS417_02065 at 463.835 kb on - strand, within PS417_02065 at 463.879 kb on - strand, within PS417_02065 at 463.982 kb on - strand, within PS417_02065 at 463.982 kb on - strand, within PS417_02065 at 464.083 kb on + strand, within PS417_02065 at 464.084 kb on - strand, within PS417_02065 at 464.573 kb on - strand at 464.578 kb on + strand at 464.610 kb on + strand at 464.611 kb on - strand at 464.611 kb on - strand at 464.611 kb on - strand at 464.611 kb on - strand at 464.828 kb on - strand at 464.828 kb on - strand at 465.330 kb on - strand, within PS417_02070 at 465.476 kb on - strand at 465.596 kb on + strand, within PS417_02075 at 465.597 kb on - strand, within PS417_02075 at 465.597 kb on - strand, within PS417_02075 at 465.734 kb on + strand, within PS417_02075 at 465.734 kb on + strand, within PS417_02075 at 465.734 kb on + strand, within PS417_02075 at 465.735 kb on - strand, within PS417_02075 at 465.735 kb on - strand, within PS417_02075 at 466.142 kb on + strand, within PS417_02080 at 466.142 kb on + strand, within PS417_02080 at 466.317 kb on + strand, within PS417_02080
Per-strain Table
Position Strand Gene LocusTag Fraction Vogels_fungal_media; pH 5.5 remove 463,811 + PS417_02065 0.58 -0.2 463,812 - PS417_02065 0.58 +0.9 463,835 - PS417_02065 0.59 +0.6 463,879 - PS417_02065 0.61 +0.8 463,982 - PS417_02065 0.66 -1.4 463,982 - PS417_02065 0.66 -0.4 464,083 + PS417_02065 0.70 +0.5 464,084 - PS417_02065 0.70 +0.8 464,573 - +0.9 464,578 + +0.5 464,610 + +0.1 464,611 - +0.2 464,611 - -0.8 464,611 - +0.8 464,611 - -0.1 464,828 - +0.7 464,828 - -0.7 465,330 - PS417_02070 0.85 -0.8 465,476 - +0.5 465,596 + PS417_02075 0.33 +0.2 465,597 - PS417_02075 0.33 -1.5 465,597 - PS417_02075 0.33 +0.6 465,734 + PS417_02075 0.65 -0.6 465,734 + PS417_02075 0.65 +0.2 465,734 + PS417_02075 0.65 +0.2 465,735 - PS417_02075 0.65 -0.7 465,735 - PS417_02075 0.65 -0.1 466,142 + PS417_02080 0.17 +0.3 466,142 + PS417_02080 0.17 +0.5 466,317 + PS417_02080 0.29 +1.2
Or see this region's nucleotide sequence