Strain Fitness in Pseudomonas simiae WCS417 around PS417_20415

Experiment: Vogels_fungal_media; pH 5.5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Vogels_fungal_media; pH 5.5
4,427,475	+		PS417_20405	0.84	-0.5
4,427,475	+		PS417_20405	0.84	-0.1
4,427,476	-		PS417_20405	0.84	-1.7
4,427,476	-		PS417_20405	0.84	-0.9
4,427,476	-		PS417_20405	0.84	+0.6
4,427,486	+		PS417_20405	0.88	+0.7
4,427,486	+		PS417_20405	0.88	-0.4
4,427,486	+		PS417_20405	0.88	-0.5
4,427,487	-		PS417_20405	0.89	+0.4
4,427,487	-		PS417_20405	0.89	-0.1
4,427,487	-		PS417_20405	0.89	-0.5
4,427,487	-		PS417_20405	0.89	-0.2
4,427,489	+		PS417_20405	0.89	+0.1
4,427,489	+		PS417_20405	0.89	-0.1
4,427,489	+		PS417_20405	0.89	+0.2
4,427,490	-		PS417_20405	0.90	+0.5
4,427,539	+				-0.2
4,427,617	-				+2.0
4,427,629	+				-1.2
4,427,630	-				-0.3
4,427,630	-				-0.1
4,427,630	-				-0.3
4,427,712	+		PS417_20410	0.19	+0.4
4,427,713	-		PS417_20410	0.20	+0.7
4,427,713	-		PS417_20410	0.20	-1.7
4,427,731	+		PS417_20410	0.25	-0.1
4,427,731	+		PS417_20410	0.25	-0.0
4,427,732	-		PS417_20410	0.26	-0.1
4,427,812	+		PS417_20410	0.52	+0.6
4,427,812	+		PS417_20410	0.52	+0.7
4,427,812	+		PS417_20410	0.52	-0.3
4,427,857	+		PS417_20410	0.67	+0.2
4,427,857	+		PS417_20410	0.67	-0.2
4,427,858	-		PS417_20410	0.67	-0.3
4,427,858	-		PS417_20410	0.67	+1.0
4,427,974	+				+0.1
4,427,975	-				+1.4
4,427,975	-				-0.2
4,428,203	-				+0.6
4,428,332	+				+2.4
4,428,352	-				-0.1
4,428,356	-				+1.0
4,428,356	-				+0.5
4,428,366	+				-0.5
4,428,423	+				-1.0
4,428,508	-				+1.3
4,428,569	+				+1.4
4,428,601	-		PS417_20415	0.10	+0.4
4,428,962	-		PS417_20415	0.37	+1.2
4,429,139	+				-0.5
4,429,222	+		PS417_20415	0.56	+0.7
4,429,242	+		PS417_20415	0.58	+1.0
4,429,242	+		PS417_20415	0.58	+0.7
4,429,246	+		PS417_20415	0.58	+0.4
4,429,302	-		PS417_20415	0.62	-0.2
4,429,855	-				-0.3
4,430,076	+		PS417_20420	0.13	+0.9
4,430,179	-				+0.1
4,430,282	+		PS417_20420	0.23	+0.6
4,430,282	+		PS417_20420	0.23	+0.2
4,430,495	+		PS417_20420	0.34	+1.1
4,430,498	-		PS417_20420	0.34	+0.5
4,430,509	-		PS417_20420	0.34	+1.1
4,430,777	+		PS417_20420	0.47	-0.5