Experiment: Vogels_fungal_media; pH 5.5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_02000 and PS417_02005 are separated by 32 nucleotides PS417_02005 and PS417_02010 are separated by 263 nucleotides
PS417_02000: PS417_02000 - glutamate synthase, at 443,433 to 447,878
_02000
PS417_02005: PS417_02005 - glutamate synthase, at 447,911 to 449,329
_02005
PS417_02010: PS417_02010 - uroporphyrinogen decarboxylase, at 449,593 to 450,660
_02010
Position (kb) 447
448
449
450 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 447.141 kb on - strand, within PS417_02000 at 447.297 kb on + strand, within PS417_02000 at 447.298 kb on - strand, within PS417_02000 at 447.298 kb on - strand, within PS417_02000 at 447.381 kb on + strand, within PS417_02000 at 447.423 kb on + strand, within PS417_02000 at 447.537 kb on + strand at 447.615 kb on + strand at 447.616 kb on - strand at 447.739 kb on - strand at 447.796 kb on - strand at 447.796 kb on - strand at 447.908 kb on - strand at 447.908 kb on - strand at 447.929 kb on - strand at 448.013 kb on + strand at 448.014 kb on - strand at 448.014 kb on - strand at 448.014 kb on - strand at 448.292 kb on + strand, within PS417_02005 at 448.292 kb on + strand, within PS417_02005 at 448.292 kb on + strand, within PS417_02005 at 448.292 kb on + strand, within PS417_02005 at 448.292 kb on + strand, within PS417_02005 at 448.292 kb on + strand, within PS417_02005 at 448.292 kb on + strand, within PS417_02005 at 448.293 kb on - strand, within PS417_02005 at 448.512 kb on + strand, within PS417_02005 at 448.614 kb on - strand, within PS417_02005 at 448.614 kb on - strand, within PS417_02005 at 448.643 kb on + strand, within PS417_02005 at 448.644 kb on - strand, within PS417_02005 at 448.644 kb on - strand, within PS417_02005 at 448.644 kb on - strand, within PS417_02005 at 448.644 kb on - strand, within PS417_02005 at 448.649 kb on + strand, within PS417_02005 at 448.650 kb on - strand, within PS417_02005 at 448.650 kb on - strand, within PS417_02005 at 448.691 kb on + strand, within PS417_02005 at 448.692 kb on - strand, within PS417_02005 at 448.946 kb on + strand, within PS417_02005 at 448.946 kb on + strand, within PS417_02005 at 448.947 kb on - strand, within PS417_02005 at 449.397 kb on + strand at 449.398 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Vogels_fungal_media; pH 5.5 remove 447,141 - PS417_02000 0.83 -3.4 447,297 + PS417_02000 0.87 -3.6 447,298 - PS417_02000 0.87 -2.2 447,298 - PS417_02000 0.87 -1.6 447,381 + PS417_02000 0.89 -0.4 447,423 + PS417_02000 0.90 -2.3 447,537 + -3.0 447,615 + -0.1 447,616 - -4.6 447,739 - -0.8 447,796 - -0.2 447,796 - -1.6 447,908 - -4.3 447,908 - -4.4 447,929 - +0.2 448,013 + -1.8 448,014 - +0.3 448,014 - -1.7 448,014 - -3.5 448,292 + PS417_02005 0.27 -5.3 448,292 + PS417_02005 0.27 -1.8 448,292 + PS417_02005 0.27 -2.7 448,292 + PS417_02005 0.27 -2.8 448,292 + PS417_02005 0.27 -3.5 448,292 + PS417_02005 0.27 -4.1 448,292 + PS417_02005 0.27 -3.1 448,293 - PS417_02005 0.27 -0.0 448,512 + PS417_02005 0.42 -1.8 448,614 - PS417_02005 0.50 -3.7 448,614 - PS417_02005 0.50 -4.7 448,643 + PS417_02005 0.52 -1.1 448,644 - PS417_02005 0.52 -4.3 448,644 - PS417_02005 0.52 -3.1 448,644 - PS417_02005 0.52 -1.1 448,644 - PS417_02005 0.52 -3.4 448,649 + PS417_02005 0.52 -4.7 448,650 - PS417_02005 0.52 -2.2 448,650 - PS417_02005 0.52 -3.6 448,691 + PS417_02005 0.55 -2.0 448,692 - PS417_02005 0.55 -1.0 448,946 + PS417_02005 0.73 -5.7 448,946 + PS417_02005 0.73 -1.5 448,947 - PS417_02005 0.73 -1.1 449,397 + +0.9 449,398 - -1.8
Or see this region's nucleotide sequence