Strain Fitness in Pseudomonas simiae WCS417 around PS417_20160

Experiment: Vogels_fungal_media; pH 5.5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Vogels_fungal_media; pH 5.5
4,375,505	+		PS417_20155	0.50	+0.5
4,375,505	+		PS417_20155	0.50	+0.3
4,375,506	-		PS417_20155	0.50	-1.3
4,375,506	-		PS417_20155	0.50	+0.6
4,375,508	-		PS417_20155	0.51	+0.1
4,375,508	-		PS417_20155	0.51	-0.7
4,375,534	+		PS417_20155	0.52	-1.1
4,375,534	+		PS417_20155	0.52	-0.2
4,375,535	-		PS417_20155	0.53	+1.2
4,375,535	-		PS417_20155	0.53	-0.2
4,375,922	+		PS417_20155	0.81	-1.5
4,376,280	+		PS417_20160	0.12	-0.4
4,376,406	-		PS417_20160	0.25	-1.6
4,376,420	+		PS417_20160	0.27	-3.9
4,376,420	+		PS417_20160	0.27	-3.0
4,376,421	-		PS417_20160	0.27	-3.1
4,376,615	+		PS417_20160	0.49	-4.3
4,376,616	-		PS417_20160	0.49	-4.1
4,376,814	-		PS417_20160	0.71	-1.4
4,377,060	+				-2.9
4,377,061	-				-4.3
4,377,084	-				-1.0
4,377,196	-				-0.6
4,377,262	-				-0.1
4,377,289	+				-0.0
4,377,303	+				-0.4
4,377,303	+				+1.3
4,377,413	-				+0.3
4,377,477	+				+0.0
4,377,478	-				+0.0
4,377,676	+				-0.4
4,377,676	+				+0.4
4,377,737	+				-0.7
4,377,738	-				-0.2
4,377,794	-		PS417_20165	0.10	+0.6
4,377,875	+		PS417_20165	0.12	-0.8
4,378,033	-		PS417_20165	0.14	+0.4