Strain Fitness in Pseudomonas simiae WCS417 around PS417_02000

Experiment: Vogels_fungal_media; pH 5.5

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_01990 and PS417_01995 are separated by 98 nucleotidesPS417_01995 and PS417_02000 overlap by 21 nucleotidesPS417_02000 and PS417_02005 are separated by 32 nucleotides PS417_01990: PS417_01990 - cell division protein, at 441,508 to 443,079 _01990 PS417_01995: PS417_01995 - hypothetical protein, at 443,178 to 443,453 _01995 PS417_02000: PS417_02000 - glutamate synthase, at 443,433 to 447,878 _02000 PS417_02005: PS417_02005 - glutamate synthase, at 447,911 to 449,329 _02005 Position (kb) 443 444 445 446 447 448Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 442.901 kb on - strand, within PS417_01990at 442.951 kb on + strandat 443.149 kb on + strandat 443.149 kb on + strandat 443.149 kb on + strandat 443.236 kb on + strand, within PS417_01995at 443.255 kb on + strand, within PS417_01995at 443.317 kb on - strand, within PS417_01995at 443.317 kb on - strand, within PS417_01995at 443.520 kb on - strandat 443.686 kb on - strandat 443.916 kb on - strand, within PS417_02000at 443.964 kb on + strand, within PS417_02000at 443.997 kb on + strand, within PS417_02000at 443.998 kb on - strand, within PS417_02000at 443.998 kb on - strand, within PS417_02000at 443.998 kb on - strand, within PS417_02000at 443.999 kb on + strand, within PS417_02000at 444.037 kb on - strand, within PS417_02000at 444.105 kb on - strand, within PS417_02000at 444.412 kb on - strand, within PS417_02000at 444.577 kb on - strand, within PS417_02000at 444.702 kb on + strand, within PS417_02000at 444.777 kb on + strand, within PS417_02000at 444.778 kb on - strand, within PS417_02000at 444.778 kb on - strand, within PS417_02000at 444.801 kb on + strand, within PS417_02000at 444.802 kb on - strand, within PS417_02000at 444.813 kb on + strand, within PS417_02000at 444.814 kb on - strand, within PS417_02000at 444.814 kb on - strand, within PS417_02000at 444.814 kb on - strand, within PS417_02000at 445.176 kb on + strand, within PS417_02000at 445.515 kb on + strand, within PS417_02000at 445.516 kb on - strand, within PS417_02000at 445.803 kb on + strand, within PS417_02000at 445.881 kb on + strand, within PS417_02000at 445.882 kb on - strand, within PS417_02000at 446.190 kb on + strand, within PS417_02000at 446.190 kb on + strand, within PS417_02000at 446.190 kb on + strand, within PS417_02000at 446.352 kb on + strand, within PS417_02000at 446.352 kb on + strandat 446.353 kb on - strand, within PS417_02000at 446.353 kb on - strand, within PS417_02000at 446.740 kb on - strand, within PS417_02000at 446.853 kb on + strand, within PS417_02000at 447.141 kb on - strand, within PS417_02000at 447.297 kb on + strand, within PS417_02000at 447.298 kb on - strand, within PS417_02000at 447.298 kb on - strand, within PS417_02000at 447.381 kb on + strand, within PS417_02000at 447.423 kb on + strand, within PS417_02000at 447.537 kb on + strandat 447.615 kb on + strandat 447.616 kb on - strandat 447.739 kb on - strandat 447.796 kb on - strandat 447.796 kb on - strandat 447.908 kb on - strandat 447.908 kb on - strandat 447.929 kb on - strandat 448.013 kb on + strandat 448.014 kb on - strandat 448.014 kb on - strandat 448.014 kb on - strandat 448.292 kb on + strand, within PS417_02005at 448.292 kb on + strand, within PS417_02005at 448.292 kb on + strand, within PS417_02005at 448.292 kb on + strand, within PS417_02005at 448.292 kb on + strand, within PS417_02005at 448.292 kb on + strand, within PS417_02005at 448.292 kb on + strand, within PS417_02005at 448.293 kb on - strand, within PS417_02005at 448.512 kb on + strand, within PS417_02005at 448.614 kb on - strand, within PS417_02005at 448.614 kb on - strand, within PS417_02005at 448.643 kb on + strand, within PS417_02005at 448.644 kb on - strand, within PS417_02005at 448.644 kb on - strand, within PS417_02005at 448.644 kb on - strand, within PS417_02005at 448.644 kb on - strand, within PS417_02005at 448.649 kb on + strand, within PS417_02005at 448.650 kb on - strand, within PS417_02005at 448.650 kb on - strand, within PS417_02005at 448.691 kb on + strand, within PS417_02005at 448.692 kb on - strand, within PS417_02005

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Per-strain Table

Position Strand Gene LocusTag Fraction Vogels_fungal_media; pH 5.5
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442,901 - PS417_01990 0.89 +0.5
442,951 + -2.0
443,149 + -0.4
443,149 + +0.4
443,149 + +0.8
443,236 + PS417_01995 0.21 +0.3
443,255 + PS417_01995 0.28 +0.4
443,317 - PS417_01995 0.50 -2.4
443,317 - PS417_01995 0.50 -2.5
443,520 - -1.1
443,686 - -2.3
443,916 - PS417_02000 0.11 -1.3
443,964 + PS417_02000 0.12 -0.4
443,997 + PS417_02000 0.13 +0.4
443,998 - PS417_02000 0.13 -3.5
443,998 - PS417_02000 0.13 -1.6
443,998 - PS417_02000 0.13 -1.5
443,999 + PS417_02000 0.13 -3.9
444,037 - PS417_02000 0.14 -2.5
444,105 - PS417_02000 0.15 -3.2
444,412 - PS417_02000 0.22 -4.3
444,577 - PS417_02000 0.26 -1.8
444,702 + PS417_02000 0.29 -1.4
444,777 + PS417_02000 0.30 -2.8
444,778 - PS417_02000 0.30 -2.2
444,778 - PS417_02000 0.30 -1.5
444,801 + PS417_02000 0.31 -2.9
444,802 - PS417_02000 0.31 -2.0
444,813 + PS417_02000 0.31 -3.8
444,814 - PS417_02000 0.31 +0.4
444,814 - PS417_02000 0.31 +0.2
444,814 - PS417_02000 0.31 -2.3
445,176 + PS417_02000 0.39 -2.6
445,515 + PS417_02000 0.47 -2.0
445,516 - PS417_02000 0.47 -3.1
445,803 + PS417_02000 0.53 -5.0
445,881 + PS417_02000 0.55 -0.8
445,882 - PS417_02000 0.55 -1.6
446,190 + PS417_02000 0.62 -3.3
446,190 + PS417_02000 0.62 -3.1
446,190 + PS417_02000 0.62 -0.1
446,352 + PS417_02000 0.66 -1.7
446,352 + -0.1
446,353 - PS417_02000 0.66 -0.4
446,353 - PS417_02000 0.66 -2.5
446,740 - PS417_02000 0.74 -1.0
446,853 + PS417_02000 0.77 -4.0
447,141 - PS417_02000 0.83 -3.4
447,297 + PS417_02000 0.87 -3.6
447,298 - PS417_02000 0.87 -2.2
447,298 - PS417_02000 0.87 -1.6
447,381 + PS417_02000 0.89 -0.4
447,423 + PS417_02000 0.90 -2.3
447,537 + -3.0
447,615 + -0.1
447,616 - -4.6
447,739 - -0.8
447,796 - -0.2
447,796 - -1.6
447,908 - -4.3
447,908 - -4.4
447,929 - +0.2
448,013 + -1.8
448,014 - +0.3
448,014 - -1.7
448,014 - -3.5
448,292 + PS417_02005 0.27 -5.3
448,292 + PS417_02005 0.27 -1.8
448,292 + PS417_02005 0.27 -2.7
448,292 + PS417_02005 0.27 -2.8
448,292 + PS417_02005 0.27 -3.5
448,292 + PS417_02005 0.27 -4.1
448,292 + PS417_02005 0.27 -3.1
448,293 - PS417_02005 0.27 -0.0
448,512 + PS417_02005 0.42 -1.8
448,614 - PS417_02005 0.50 -3.7
448,614 - PS417_02005 0.50 -4.7
448,643 + PS417_02005 0.52 -1.1
448,644 - PS417_02005 0.52 -4.3
448,644 - PS417_02005 0.52 -3.1
448,644 - PS417_02005 0.52 -1.1
448,644 - PS417_02005 0.52 -3.4
448,649 + PS417_02005 0.52 -4.7
448,650 - PS417_02005 0.52 -2.2
448,650 - PS417_02005 0.52 -3.6
448,691 + PS417_02005 0.55 -2.0
448,692 - PS417_02005 0.55 -1.0

Or see this region's nucleotide sequence