Strain Fitness in Pseudomonas simiae WCS417 around PS417_20055

Experiment: Vogels_fungal_media; pH 5.5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Vogels_fungal_media; pH 5.5
4,351,424	+				-0.6
4,351,425	-				+0.6
4,351,562	+		PS417_20050	0.16	-0.7
4,351,562	+		PS417_20050	0.16	-2.0
4,351,562	+		PS417_20050	0.16	-1.1
4,351,562	+		PS417_20050	0.16	+0.4
4,351,562	+		PS417_20050	0.16	-0.0
4,351,563	-		PS417_20050	0.16	+0.1
4,351,563	-		PS417_20050	0.16	+0.5
4,351,563	-		PS417_20050	0.16	-0.6
4,351,700	+		PS417_20050	0.31	-0.4
4,351,701	-		PS417_20050	0.31	-0.5
4,351,701	-		PS417_20050	0.31	-0.4
4,351,730	+		PS417_20050	0.34	-1.9
4,351,822	+		PS417_20050	0.45	-0.8
4,351,966	+		PS417_20050	0.60	+2.0
4,351,966	+		PS417_20050	0.60	-0.3
4,351,966	+		PS417_20050	0.60	-0.1
4,351,974	-		PS417_20050	0.61	+0.0
4,352,073	-		PS417_20050	0.72	-1.2
4,352,106	-		PS417_20050	0.76	-0.5
4,352,106	-		PS417_20050	0.76	+0.4
4,352,350	+				-1.7
4,352,413	+		PS417_20055	0.14	-1.8
4,352,737	-		PS417_20055	0.64	-0.7
4,352,737	-		PS417_20055	0.64	-0.1
4,352,737	-		PS417_20055	0.64	-1.2
4,353,000	-				-0.6
4,353,051	+				-0.1
4,353,052	-				+0.5
4,353,063	+				-0.2
4,353,063	+				-1.6
4,353,064	-				+0.6
4,353,064	-				-0.4
4,353,090	+				-0.3
4,353,174	+		PS417_20060	0.15	+0.6
4,353,174	+		PS417_20060	0.15	-0.3
4,353,174	+		PS417_20060	0.15	-0.8
4,353,175	-		PS417_20060	0.15	+0.2
4,353,175	-		PS417_20060	0.15	-0.5
4,353,175	-		PS417_20060	0.15	-0.1
4,353,175	-		PS417_20060	0.15	-0.3
4,353,175	-		PS417_20060	0.15	-0.5
4,353,175	-		PS417_20060	0.15	-2.3
4,353,175	-		PS417_20060	0.15	-0.9
4,353,175	-		PS417_20060	0.15	+1.0
4,353,175	-		PS417_20060	0.15	+0.0
4,353,179	-		PS417_20060	0.16	-0.9
4,353,322	-		PS417_20060	0.27	-0.8
4,353,447	+		PS417_20060	0.36	-1.3
4,353,447	+		PS417_20060	0.36	+0.8
4,353,448	-		PS417_20060	0.36	-2.1
4,353,543	+		PS417_20060	0.43	-1.9
4,353,543	+		PS417_20060	0.43	-0.5
4,353,543	+		PS417_20060	0.43	+0.8
4,353,728	+		PS417_20060	0.57	+1.5
4,353,729	-		PS417_20060	0.57	-2.1
4,353,738	-		PS417_20060	0.58	-0.4
4,353,749	-		PS417_20060	0.59	-0.4