Strain Fitness in Pseudomonas simiae WCS417 around PS417_00190

Experiment: Vogels_fungal_media; pH 5.5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Vogels_fungal_media; pH 5.5
39,354	-		PS417_00185	0.53	-1.0
39,513	-		PS417_00185	0.66	-2.5
39,513	-		PS417_00185	0.66	-0.7
39,513	-		PS417_00185	0.66	-2.0
39,646	-		PS417_00185	0.76	-1.4
39,917	-				-2.3
39,917	-				-3.1
40,525	-		PS417_00190	0.53	-1.6
40,728	+				-3.2
40,731	+		PS417_00190	0.76	-0.8
40,731	+		PS417_00190	0.76	-0.7
40,732	-				-0.5
40,927	+				-0.2
40,928	-				-1.9
40,940	+				+0.3
40,940	+				-0.8
40,941	-				-2.3
40,944	+				+2.4
40,945	-				-0.3
40,957	+				-0.3
40,981	+				+1.0
40,982	-				-0.5
41,047	+		PS417_00195	0.28	-1.0
41,047	+		PS417_00195	0.28	+1.0
41,047	+		PS417_00195	0.28	+1.8
41,047	+		PS417_00195	0.28	-2.2
41,048	-		PS417_00195	0.28	-1.1
41,316	+				-0.5
41,316	+				+0.2
41,316	+				+0.4
41,316	+				-0.1
41,316	+				+0.2
41,316	+				+0.2
41,317	-				+0.1
41,317	-				-0.1
41,320	+				+0.5
41,351	-				-1.4
41,351	-				-2.2
41,351	-				-1.0
41,355	-				-0.0
41,390	+				-0.7
41,417	+				+0.0
41,417	+				-0.7
41,458	-				-0.5
41,458	-				-0.3
41,648	+				-0.8
41,648	+				-0.5
41,649	-				-1.5
41,702	-				-0.8
41,745	+				-0.8
41,764	+				-0.6
41,764	+				-1.3
41,793	-		PS417_00205	0.10	-1.1