Experiment: Vogels_fungal_media; pH 5.5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_18300 and PS417_18305 are separated by 244 nucleotides PS417_18305 and PS417_18310 are separated by 90 nucleotides PS417_18310 and PS417_18315 overlap by 20 nucleotides PS417_18315 and PS417_18320 are separated by 3 nucleotides
PS417_18300: PS417_18300 - transcriptional regulator, at 3,989,889 to 3,990,572
_18300
PS417_18305: PS417_18305 - tRNA-Pro, at 3,990,817 to 3,990,893
_18305
PS417_18310: PS417_18310 - hypothetical protein, at 3,990,984 to 3,991,340
_18310
PS417_18315: PS417_18315 - integration host factor subunit alpha, at 3,991,321 to 3,991,623
_18315
PS417_18320: PS417_18320 - phenylalanyl-tRNA synthetase, at 3,991,627 to 3,994,005
_18320
Position (kb)
3990
3991
3992 Strain fitness (log2 ratio)
-1
0
1 at 3990.189 kb on + strand, within PS417_18300 at 3990.189 kb on + strand, within PS417_18300 at 3990.190 kb on - strand, within PS417_18300 at 3990.221 kb on - strand, within PS417_18300 at 3990.426 kb on + strand, within PS417_18300 at 3990.460 kb on + strand, within PS417_18300 at 3990.534 kb on + strand at 3991.123 kb on + strand, within PS417_18310 at 3991.172 kb on - strand, within PS417_18310 at 3991.240 kb on - strand, within PS417_18310
Per-strain Table
Position Strand Gene LocusTag Fraction Vogels_fungal_media; pH 5.5 remove 3,990,189 + PS417_18300 0.44 -1.3 3,990,189 + PS417_18300 0.44 +0.2 3,990,190 - PS417_18300 0.44 -0.5 3,990,221 - PS417_18300 0.49 +0.6 3,990,426 + PS417_18300 0.79 -0.2 3,990,460 + PS417_18300 0.83 +0.0 3,990,534 + -0.5 3,991,123 + PS417_18310 0.39 -0.4 3,991,172 - PS417_18310 0.53 -0.8 3,991,240 - PS417_18310 0.72 +0.0
Or see this region's nucleotide sequence