Strain Fitness in Pseudomonas simiae WCS417 around PS417_16420

Experiment: Vogels_fungal_media; pH 5.5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Vogels_fungal_media; pH 5.5
3,589,532	+				+3.2
3,589,532	+		PS417_16415	0.63	-0.0
3,589,533	-		PS417_16415	0.64	-0.2
3,589,697	+		PS417_16415	0.83	-0.5
3,589,697	+		PS417_16415	0.83	-0.3
3,589,698	-		PS417_16415	0.84	-0.2
3,589,821	+				+1.0
3,589,942	+				-1.7
3,589,943	-				-0.4
3,589,959	+				-0.4
3,589,974	+				+0.3
3,589,975	-				+0.7
3,589,995	+				-1.2
3,590,020	-				+0.3
3,590,073	+				-0.0
3,590,073	+				+0.5
3,590,186	+		PS417_16420	0.15	-0.2
3,590,186	+		PS417_16420	0.15	+0.6
3,590,187	-		PS417_16420	0.15	-0.6
3,590,327	+		PS417_16420	0.38	-0.3
3,590,435	+		PS417_16420	0.56	-0.1
3,590,435	+		PS417_16420	0.56	+0.2
3,590,435	+		PS417_16420	0.56	-0.8
3,590,435	+		PS417_16420	0.56	-0.1
3,590,436	-				+1.8
3,590,485	+				+0.2
3,590,534	+		PS417_16420	0.73	-0.9
3,590,534	+		PS417_16420	0.73	-2.9
3,590,534	+		PS417_16420	0.73	-0.8
3,590,535	-		PS417_16420	0.73	-0.8
3,590,543	+		PS417_16420	0.74	-0.5
3,590,543	+		PS417_16420	0.74	-1.4
3,590,544	-		PS417_16420	0.74	-0.6
3,590,688	-				-0.1
3,590,798	+				-1.4
3,590,817	+				-0.2
3,590,817	+				-0.7
3,590,821	+				-1.0
3,590,821	+				-0.0
3,590,821	+				-1.0
3,590,821	+				+0.9
3,590,821	+				-0.1
3,590,821	+				-0.3
3,590,822	-				-2.2
3,590,822	-				+1.1
3,590,822	-				-0.3
3,591,147	+		PS417_16425	0.65	+0.3
3,591,147	+		PS417_16425	0.65	+0.6
3,591,148	-		PS417_16425	0.65	-0.5
3,591,151	+		PS417_16425	0.65	+0.7
3,591,151	+		PS417_16425	0.65	-0.4
3,591,152	-		PS417_16425	0.66	+0.1
3,591,152	-		PS417_16425	0.66	+1.6
3,591,152	-		PS417_16425	0.66	+0.7
3,591,181	+		PS417_16425	0.72	-0.4
3,591,181	+		PS417_16425	0.72	-0.8
3,591,183	+		PS417_16425	0.72	+0.6
3,591,183	+		PS417_16425	0.72	-0.0
3,591,183	+		PS417_16425	0.72	-0.3
3,591,183	+		PS417_16425	0.72	+0.8
3,591,184	-		PS417_16425	0.72	-0.5
3,591,184	-		PS417_16425	0.72	+0.7
3,591,184	-		PS417_16425	0.72	-0.9
3,591,184	-		PS417_16425	0.72	-1.0
3,591,187	+		PS417_16425	0.73	+1.1
3,591,187	+		PS417_16425	0.73	-0.8
3,591,187	+		PS417_16425	0.73	+0.5
3,591,188	-		PS417_16425	0.73	-0.8
3,591,188	-				-1.4
3,591,263	-		PS417_16425	0.88	-0.7
3,591,263	-		PS417_16425	0.88	-0.5
3,591,362	-				-1.1
3,591,528	+				+2.0