Strain Fitness in Pseudomonas simiae WCS417 around PS417_15900

Experiment: Vogels_fungal_media; pH 5.5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Vogels_fungal_media; pH 5.5
3,479,868	+				-2.5
3,479,869	+				+0.5
3,479,869	+				+0.5
3,479,870	-				-0.1
3,479,870	-				-0.7
3,479,962	+		PS417_15895	0.15	-2.0
3,479,963	-		PS417_15895	0.16	-0.5
3,480,110	-		PS417_15895	0.31	+0.4
3,480,151	+		PS417_15895	0.35	+0.3
3,480,285	-		PS417_15895	0.49	+0.1
3,481,108	-				-1.3
3,481,108	-				+0.1
3,481,182	+		PS417_15900	0.13	-0.2
3,481,522	-				-1.0
3,481,522	-		PS417_15900	0.27	+0.1
3,481,531	+		PS417_15900	0.27	-0.3
3,481,531	+		PS417_15900	0.27	+1.6
3,481,532	-		PS417_15900	0.27	+0.7
3,481,534	-		PS417_15900	0.27	-0.2
3,481,785	+		PS417_15900	0.37	+0.3
3,482,169	+		PS417_15900	0.53	+0.2
3,482,169	+		PS417_15900	0.53	-0.1
3,482,170	-		PS417_15900	0.53	+0.8
3,482,170	-		PS417_15900	0.53	-0.5
3,482,170	-		PS417_15900	0.53	-0.1
3,482,170	-				-0.8
3,482,170	-		PS417_15900	0.53	+0.4
3,482,188	-		PS417_15900	0.54	+0.1
3,482,188	-		PS417_15900	0.54	+0.5
3,482,313	+		PS417_15900	0.59	-0.1
3,482,368	-		PS417_15900	0.61	+0.4
3,482,524	-				+0.3
3,482,598	+		PS417_15900	0.70	+0.3
3,482,626	-		PS417_15900	0.72	+0.9
3,482,634	+		PS417_15900	0.72	+0.5
3,482,634	+		PS417_15900	0.72	-0.2
3,482,647	-				-0.5
3,482,710	-		PS417_15900	0.75	-0.1
3,482,710	-		PS417_15900	0.75	-0.0
3,482,923	-		PS417_15900	0.84	-0.1
3,482,959	-		PS417_15900	0.85	-0.3
3,482,959	-		PS417_15900	0.85	+0.4
3,483,157	-				-0.3
3,483,157	-				+0.7
3,483,157	-				+0.0
3,483,157	-				+0.3
3,483,157	-				-0.2
3,483,159	+				+0.2
3,483,159	+				+0.2
3,483,498	+		PS417_15905	0.12	+0.2
3,483,498	+		PS417_15905	0.12	-0.6
3,483,499	-		PS417_15905	0.12	-0.8
3,483,499	-		PS417_15905	0.12	+0.2
3,483,499	-		PS417_15905	0.12	-0.8
3,483,499	-		PS417_15905	0.12	+0.3
3,483,499	-		PS417_15905	0.12	-1.4
3,483,501	-		PS417_15905	0.12	-1.9
3,483,555	+		PS417_15905	0.18	+0.3
3,483,556	-		PS417_15905	0.19	-0.0
3,483,564	+		PS417_15905	0.19	-0.1
3,483,625	+		PS417_15905	0.26	-0.1
3,483,626	-		PS417_15905	0.26	+0.8
3,483,663	+		PS417_15905	0.31	+0.4
3,483,861	+		PS417_15905	0.53	+0.8
3,483,862	-				+4.0
3,483,945	+		PS417_15905	0.62	+0.1
3,483,986	+		PS417_15905	0.67	-0.0
3,483,986	+		PS417_15905	0.67	+0.5
3,483,986	+				+0.5
3,484,237	+				+0.5
3,484,237	+				+0.1
3,484,238	-				+0.3
3,484,238	-				-0.1
3,484,238	-				-0.3
3,484,238	-				+0.7
3,484,241	+				-0.0