Experiment: Vogels_fungal_media; pH 5.5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_01560 and PS417_01565 overlap by 1 nucleotides PS417_01565 and PS417_01570 are separated by 0 nucleotides PS417_01570 and PS417_01575 are separated by 39 nucleotides PS417_01575 and PS417_01580 are separated by 9 nucleotides
PS417_01560: PS417_01560 - imidazoleglycerol-phosphate dehydratase, at 346,158 to 346,751
_01560
PS417_01565: PS417_01565 - imidazole glycerol phosphate synthase, at 346,751 to 347,389
_01565
PS417_01570: PS417_01570 - 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase, at 347,390 to 347,647
_01570
PS417_01575: PS417_01575 - 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) <small>(from data)</small>, at 347,687 to 348,424
_01575
PS417_01580: PS417_01580 - imidazole glycerol phosphate synthase, at 348,434 to 349,204
_01580
Position (kb) 347
348 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 346.406 kb on + strand, within PS417_01560 at 346.407 kb on - strand, within PS417_01560 at 346.446 kb on + strand, within PS417_01560 at 346.446 kb on + strand, within PS417_01560 at 346.524 kb on + strand, within PS417_01560 at 346.822 kb on - strand, within PS417_01565 at 347.216 kb on + strand, within PS417_01565 at 347.216 kb on + strand, within PS417_01565 at 347.217 kb on - strand, within PS417_01565 at 347.492 kb on - strand, within PS417_01570 at 347.558 kb on + strand, within PS417_01570 at 347.559 kb on - strand, within PS417_01570 at 347.730 kb on + strand at 347.806 kb on - strand, within PS417_01575 at 347.964 kb on - strand, within PS417_01575 at 347.985 kb on - strand, within PS417_01575 at 348.365 kb on + strand at 348.365 kb on + strand at 348.366 kb on - strand at 348.414 kb on - strand at 348.578 kb on - strand, within PS417_01580 at 348.578 kb on - strand, within PS417_01580
Per-strain Table
Position Strand Gene LocusTag Fraction Vogels_fungal_media; pH 5.5 remove 346,406 + PS417_01560 0.42 -1.5 346,407 - PS417_01560 0.42 -2.5 346,446 + PS417_01560 0.48 -1.0 346,446 + PS417_01560 0.48 -2.5 346,524 + PS417_01560 0.62 -2.8 346,822 - PS417_01565 0.11 -4.7 347,216 + PS417_01565 0.73 -2.3 347,216 + PS417_01565 0.73 -1.4 347,217 - PS417_01565 0.73 -3.2 347,492 - PS417_01570 0.40 -2.7 347,558 + PS417_01570 0.65 -0.2 347,559 - PS417_01570 0.66 -3.7 347,730 + -2.7 347,806 - PS417_01575 0.16 -5.4 347,964 - PS417_01575 0.38 -4.3 347,985 - PS417_01575 0.40 -1.3 348,365 + -4.7 348,365 + -1.6 348,366 - -3.5 348,414 - -2.4 348,578 - PS417_01580 0.19 -2.5 348,578 - PS417_01580 0.19 -1.4
Or see this region's nucleotide sequence