Strain Fitness in Pseudomonas simiae WCS417 around PS417_12795

Experiment: Vogels_fungal_media; pH 5.5

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_12785 and PS417_12790 are separated by 120 nucleotidesPS417_12790 and PS417_12795 are separated by 358 nucleotidesPS417_12795 and PS417_12800 are separated by 141 nucleotides PS417_12785: PS417_12785 - hypothetical protein, at 2,793,529 to 2,793,768 _12785 PS417_12790: PS417_12790 - methyltransferase, at 2,793,889 to 2,794,380 _12790 PS417_12795: PS417_12795 - alpha-1,4-glucan:maltose-1-phosphate maltosyltransferase, at 2,794,739 to 2,796,721 _12795 PS417_12800: PS417_12800 - alpha-amylase, at 2,796,863 to 2,800,210 _12800 Position (kb) 2794 2795 2796 2797Strain fitness (log2 ratio) -3 -2 -1 0 1at 2794.314 kb on + strand, within PS417_12790at 2794.652 kb on - strandat 2794.654 kb on + strandat 2794.722 kb on + strandat 2794.752 kb on + strandat 2795.033 kb on + strand, within PS417_12795at 2795.076 kb on - strand, within PS417_12795at 2795.082 kb on + strand, within PS417_12795at 2795.082 kb on + strand, within PS417_12795at 2795.082 kb on + strand, within PS417_12795at 2795.083 kb on - strand, within PS417_12795at 2795.298 kb on - strand, within PS417_12795at 2795.363 kb on + strand, within PS417_12795at 2795.417 kb on - strand, within PS417_12795at 2795.471 kb on + strandat 2795.472 kb on - strand, within PS417_12795at 2795.789 kb on + strand, within PS417_12795at 2796.042 kb on - strand, within PS417_12795at 2796.042 kb on - strand, within PS417_12795at 2796.054 kb on - strand, within PS417_12795at 2796.054 kb on - strand, within PS417_12795at 2796.060 kb on - strand, within PS417_12795at 2796.098 kb on + strandat 2796.099 kb on - strand, within PS417_12795at 2796.161 kb on - strand, within PS417_12795at 2796.161 kb on - strand, within PS417_12795at 2796.260 kb on + strand, within PS417_12795at 2796.260 kb on + strand, within PS417_12795at 2796.261 kb on - strand, within PS417_12795at 2796.261 kb on - strand, within PS417_12795at 2796.261 kb on - strand, within PS417_12795at 2796.261 kb on - strand, within PS417_12795at 2796.446 kb on + strand, within PS417_12795at 2796.644 kb on + strandat 2796.912 kb on - strandat 2796.964 kb on + strandat 2797.011 kb on - strandat 2797.082 kb on + strandat 2797.083 kb on - strandat 2797.274 kb on + strand, within PS417_12800at 2797.275 kb on - strand, within PS417_12800at 2797.275 kb on - strand, within PS417_12800at 2797.275 kb on - strand, within PS417_12800at 2797.301 kb on + strand, within PS417_12800at 2797.373 kb on + strand, within PS417_12800at 2797.391 kb on + strand, within PS417_12800at 2797.531 kb on + strand, within PS417_12800at 2797.609 kb on + strand, within PS417_12800at 2797.610 kb on - strand, within PS417_12800at 2797.610 kb on - strand, within PS417_12800at 2797.655 kb on + strand, within PS417_12800

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Per-strain Table

Position Strand Gene LocusTag Fraction Vogels_fungal_media; pH 5.5
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2,794,314 + PS417_12790 0.86 +0.2
2,794,652 - -0.1
2,794,654 + -0.3
2,794,722 + +0.0
2,794,752 + -0.6
2,795,033 + PS417_12795 0.15 -0.5
2,795,076 - PS417_12795 0.17 +0.7
2,795,082 + PS417_12795 0.17 -1.0
2,795,082 + PS417_12795 0.17 -2.8
2,795,082 + PS417_12795 0.17 -0.9
2,795,083 - PS417_12795 0.17 -0.5
2,795,298 - PS417_12795 0.28 -0.8
2,795,363 + PS417_12795 0.31 -2.5
2,795,417 - PS417_12795 0.34 -0.1
2,795,471 + -1.4
2,795,472 - PS417_12795 0.37 +0.5
2,795,789 + PS417_12795 0.53 -1.1
2,796,042 - PS417_12795 0.66 +0.5
2,796,042 - PS417_12795 0.66 -0.5
2,796,054 - PS417_12795 0.66 -2.0
2,796,054 - PS417_12795 0.66 -0.4
2,796,060 - PS417_12795 0.67 -0.3
2,796,098 + -1.2
2,796,099 - PS417_12795 0.69 -1.1
2,796,161 - PS417_12795 0.72 -0.4
2,796,161 - PS417_12795 0.72 -0.8
2,796,260 + PS417_12795 0.77 -1.1
2,796,260 + PS417_12795 0.77 -2.0
2,796,261 - PS417_12795 0.77 -0.6
2,796,261 - PS417_12795 0.77 -1.1
2,796,261 - PS417_12795 0.77 -1.3
2,796,261 - PS417_12795 0.77 -0.7
2,796,446 + PS417_12795 0.86 -0.5
2,796,644 + -3.7
2,796,912 - -0.9
2,796,964 + +1.7
2,797,011 - -0.3
2,797,082 + -0.2
2,797,083 - +1.4
2,797,274 + PS417_12800 0.12 -0.3
2,797,275 - PS417_12800 0.12 -1.8
2,797,275 - PS417_12800 0.12 +0.5
2,797,275 - PS417_12800 0.12 -0.3
2,797,301 + PS417_12800 0.13 -1.1
2,797,373 + PS417_12800 0.15 +0.1
2,797,391 + PS417_12800 0.16 +0.3
2,797,531 + PS417_12800 0.20 -0.2
2,797,609 + PS417_12800 0.22 +0.5
2,797,610 - PS417_12800 0.22 -0.3
2,797,610 - PS417_12800 0.22 +0.2
2,797,655 + PS417_12800 0.24 +0.0

Or see this region's nucleotide sequence