Strain Fitness in Pseudomonas simiae WCS417 around PS417_12315

Experiment: Vogels_fungal_media; pH 5.5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Vogels_fungal_media; pH 5.5
2,676,205	+				-0.1
2,676,205	+				-1.3
2,676,206	-				-0.1
2,676,212	-				-1.1
2,676,474	+				-0.8
2,676,475	-				+0.1
2,676,516	+				-0.2
2,676,569	-				+0.5
2,676,613	+				-0.6
2,676,635	+				+0.0
2,676,646	-				+0.1
2,676,692	+				-0.0
2,676,693	-				+0.4
2,676,909	-				+0.6
2,676,953	+		PS417_12315	0.11	+0.3
2,676,953	+		PS417_12315	0.11	+1.7
2,676,954	-		PS417_12315	0.11	+1.0
2,677,220	+		PS417_12315	0.23	+0.3
2,677,397	+		PS417_12315	0.31	+0.9
2,677,397	+		PS417_12315	0.31	-0.4
2,677,517	+		PS417_12315	0.36	+0.4
2,677,517	+		PS417_12315	0.36	+1.2
2,677,517	+		PS417_12315	0.36	+0.5
2,677,749	+		PS417_12315	0.46	-0.2
2,677,851	-		PS417_12315	0.50	-0.1
2,677,963	+		PS417_12315	0.55	+0.4
2,677,994	+		PS417_12315	0.57	-0.9
2,677,995	-		PS417_12315	0.57	+0.2
2,677,995	-		PS417_12315	0.57	+0.6
2,678,159	+		PS417_12315	0.64	+1.5
2,678,159	+		PS417_12315	0.64	-1.0
2,678,159	+				+0.0
2,678,159	+		PS417_12315	0.64	-1.7
2,678,160	-		PS417_12315	0.64	-0.0
2,678,160	-		PS417_12315	0.64	+0.1
2,678,163	-		PS417_12315	0.64	+0.3
2,678,225	+		PS417_12315	0.67	+0.6
2,678,225	+		PS417_12315	0.67	+0.6
2,678,226	-		PS417_12315	0.67	+0.5
2,678,337	+		PS417_12315	0.72	-0.1
2,678,337	+		PS417_12315	0.72	+1.0
2,678,337	+				+1.4
2,678,338	-		PS417_12315	0.72	+2.0
2,678,338	-		PS417_12315	0.72	+2.0
2,678,338	-		PS417_12315	0.72	+0.3
2,678,348	+				-3.1
2,678,348	+		PS417_12315	0.72	+0.6
2,678,349	-		PS417_12315	0.72	+0.8
2,678,675	-		PS417_12315	0.86	+0.4
2,678,779	+				+0.0
2,678,901	-				+2.0
2,678,901	-				+0.1
2,678,935	+				+0.8
2,678,936	-				+0.4
2,679,000	+				+0.2
2,679,000	+				-0.0
2,679,000	+				-0.7
2,679,000	+				-0.0
2,679,001	-				+0.7
2,679,001	-				-0.2
2,679,030	-				+0.2
2,679,058	+				+1.3
2,679,058	+				-0.5
2,679,116	+				+0.3
2,679,117	-				-0.9
2,679,242	+				-0.1
2,679,242	+				-0.2
2,679,398	-				+0.0
2,679,404	+				+0.9
2,679,404	+				+0.2
2,679,404	+				-0.1
2,679,408	+				+0.4
2,679,408	+				+0.5
2,679,408	+				+0.0
2,679,409	-				-1.6
2,679,409	-				-0.1
2,679,409	-				+0.1
2,679,409	-				+0.5