Strain Fitness in Pseudomonas simiae WCS417 around PS417_10715

Experiment: Vogels_fungal_media; pH 5.5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Vogels_fungal_media; pH 5.5
2,289,193	+				-1.4
2,289,193	+				-0.5
2,289,314	+				+0.4
2,289,314	+				-0.0
2,289,315	-				-0.4
2,289,315	-				+0.3
2,289,364	+				-0.6
2,289,365	-				+0.2
2,289,368	+				+0.3
2,289,368	+				-0.8
2,289,368	+				+0.2
2,289,369	-				-0.8
2,289,369	-				+0.1
2,289,369	-				-0.1
2,289,375	-				+0.0
2,289,407	+				-0.2
2,289,519	+		PS417_10710	0.21	+0.8
2,289,643	-		PS417_10710	0.50	-0.2
2,289,660	-				+0.8
2,289,834	-				+0.0
2,289,878	-				+0.9
2,289,880	+				-2.3
2,289,880	+				-0.1
2,289,937	+				-0.4
2,289,938	-				-0.3
2,289,941	-				-0.5
2,289,979	-				-0.7
2,290,030	+				-0.7
2,290,030	+				-1.6
2,290,030	+				-1.3
2,290,030	+				-0.3
2,290,031	-				+0.5
2,290,031	-				-0.7
2,290,031	-				-0.1
2,290,051	+				-2.4
2,290,051	+				-1.7
2,290,051	+				+1.0
2,290,051	+				-1.4
2,290,076	+				-1.5
2,290,076	+				+0.6
2,290,143	-				+0.0
2,290,443	+		PS417_10715	0.78	-0.9
2,290,443	+		PS417_10715	0.78	-1.5
2,290,443	+		PS417_10715	0.78	-0.6
2,290,445	+		PS417_10715	0.78	-0.0
2,290,528	-				-0.0
2,290,541	+				-0.1
2,290,570	-				-0.7
2,290,587	+				-0.8
2,290,587	+				+0.1
2,290,587	+				-0.1
2,290,588	-				-0.2
2,290,588	-				-0.6
2,290,589	+				+0.7
2,290,589	+				-0.6
2,290,589	+				+0.2
2,290,590	-				+0.8
2,290,591	+				+0.3
2,290,591	+				-0.3
2,290,591	+				-0.1
2,290,591	+				-0.2
2,290,591	+				-0.6
2,290,591	+				+0.1
2,290,591	+				-1.3
2,290,591	+				-0.7
2,290,591	+				+0.3
2,290,592	-				-0.2
2,290,592	-				+0.7
2,290,592	-				-0.5
2,290,592	-				+0.2
2,290,592	-				-2.2
2,290,592	-				+0.4
2,290,592	-				+0.0
2,290,592	-				+0.0
2,290,592	-				-0.2
2,290,593	+				+0.0
2,290,593	+				-0.6
2,290,593	+				-0.6
2,290,593	+				-0.7
2,290,593	+				+1.0
2,290,594	-				+1.7
2,290,594	-				+0.6
2,290,594	-				-0.7
2,290,609	-				+0.4
2,290,609	-				-0.3
2,290,649	+				+0.0
2,290,650	-				-1.5
2,290,650	-				+0.2
2,290,650	-				-2.9
2,290,650	-				-0.2
2,290,651	+				-0.3
2,290,652	-				+1.2
2,290,652	-				-0.3
2,290,682	-				-0.4
2,290,692	+				-0.7
2,290,717	+				-0.5
2,290,717	+				-0.6
2,290,726	+				-0.2
2,290,761	+				-0.0
2,290,761	+		PS417_10720	0.13	-0.3
2,290,762	-		PS417_10720	0.13	-0.6
2,291,045	+		PS417_10720	0.57	-0.1
2,291,045	+		PS417_10720	0.57	-0.2
2,291,045	+		PS417_10720	0.57	-0.5
2,291,050	-		PS417_10720	0.58	-1.9
2,291,412	+				-0.0
2,291,413	-				-0.3
2,291,413	-				-0.8
2,291,454	+				-0.2
2,291,454	+				-0.8