Strain Fitness in Pseudomonas simiae WCS417 around PS417_10200

Experiment: Vogels_fungal_media; pH 5.5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Vogels_fungal_media; pH 5.5
2,179,593	-		PS417_10190	0.80	+0.4
2,179,751	-				-0.3
2,179,753	-				-0.0
2,179,758	+				-0.7
2,179,759	-				-2.1
2,179,767	-				+0.2
2,179,780	-				+0.5
2,179,801	-				+0.2
2,179,841	-				-0.4
2,179,841	-				-0.6
2,179,841	-				+0.5
2,179,845	-				-0.6
2,179,845	-				+0.8
2,179,845	-				+0.6
2,179,848	-				+0.0
2,179,848	-				-0.3
2,179,848	-				+0.5
2,179,857	-				-0.0
2,179,857	-				-0.4
2,179,857	-				-0.1
2,179,860	-				+0.5
2,179,860	-				-0.3
2,179,865	-				+0.1
2,179,890	-				+0.4
2,179,890	-				+0.7
2,179,952	-				-0.1
2,180,108	+				+0.5
2,180,128	+				+0.1
2,180,129	-				+0.7
2,180,257	-				+0.3
2,180,332	+				+1.4
2,180,333	-				+1.0
2,180,362	-				-0.1
2,180,362	-				+0.5
2,180,362	-				-1.1
2,180,362	-				-0.3
2,180,481	+				-0.8
2,180,482	-				+2.0
2,180,563	+				+0.8
2,180,563	+				-0.2
2,180,564	-				-1.7
2,180,564	-				-1.1
2,180,565	+				+0.6
2,180,566	-				-0.8
2,180,732	-		PS417_10200	0.12	+0.4
2,180,777	-		PS417_10200	0.13	+0.3
2,180,996	-		PS417_10200	0.19	+0.0
2,181,082	+		PS417_10200	0.22	+0.4
2,181,082	+		PS417_10200	0.22	-0.1
2,181,083	-				+0.2
2,181,103	+		PS417_10200	0.22	+0.4
2,181,104	-		PS417_10200	0.22	-0.5
2,181,104	-		PS417_10200	0.22	+0.9
2,181,123	+		PS417_10200	0.23	+0.5
2,181,124	-		PS417_10200	0.23	+0.6
2,181,362	+		PS417_10200	0.29	+1.1
2,181,363	-		PS417_10200	0.29	-0.3
2,181,373	+		PS417_10200	0.30	+0.2
2,181,388	+		PS417_10200	0.30	+1.0
2,181,454	+		PS417_10200	0.32	+0.1
2,181,518	-				-1.6
2,181,539	-		PS417_10200	0.34	-0.1
2,181,559	+		PS417_10200	0.35	+2.0
2,181,560	-		PS417_10200	0.35	-1.0
2,181,675	+		PS417_10200	0.38	+0.3
2,181,714	+		PS417_10200	0.39	-0.0
2,182,088	-		PS417_10200	0.49	+0.1
2,182,204	+		PS417_10200	0.53	+2.5
2,182,228	-		PS417_10200	0.53	+0.2
2,182,361	-		PS417_10200	0.57	+0.3
2,182,499	+		PS417_10200	0.61	+0.6
2,182,499	+				+1.7
2,182,500	-		PS417_10200	0.61	-0.1
2,182,504	+		PS417_10200	0.61	+0.6
2,182,571	-				+0.4
2,182,573	-		PS417_10200	0.63	+0.2
2,182,721	-		PS417_10200	0.67	+0.4
2,182,772	-		PS417_10200	0.68	+1.1
2,182,780	+		PS417_10200	0.69	+0.2
2,182,781	-		PS417_10200	0.69	-2.3
2,182,781	-		PS417_10200	0.69	+0.1
2,182,939	+		PS417_10200	0.73	+0.8
2,182,940	-		PS417_10200	0.73	+0.5
2,182,940	-		PS417_10200	0.73	+0.0
2,182,940	-		PS417_10200	0.73	+1.0
2,182,954	-		PS417_10200	0.74	+0.2
2,182,954	-		PS417_10200	0.74	+0.3
2,182,954	-		PS417_10200	0.74	-1.1
2,183,047	+		PS417_10200	0.76	+0.6
2,183,047	+		PS417_10200	0.76	-0.2
2,183,177	-				+0.4
2,183,177	-		PS417_10200	0.80	-0.7
2,183,312	+		PS417_10200	0.83	+1.2
2,183,313	-		PS417_10200	0.83	-0.9
2,183,514	+		PS417_10200	0.89	+0.8
2,183,534	+		PS417_10200	0.90	+1.3
2,183,535	-		PS417_10200	0.90	-0.1
2,183,535	-				-0.0
2,183,648	+				+0.4
2,183,688	+				+1.0
2,183,854	+				+1.2
2,183,905	+				+1.3
2,183,906	-				-0.1
2,183,909	+				+0.8
2,183,910	-				+0.7
2,183,980	-				-0.3
2,183,986	+				+0.8
2,184,034	+				+0.6
2,184,045	-				+0.2
2,184,052	-				-1.3
2,184,088	+				+0.4
2,184,100	-				+1.8
2,184,100	-				+0.2
2,184,277	-				-0.0
2,184,286	+				+0.2
2,184,311	-				-0.9
2,184,398	-		PS417_10205	0.14	+0.1
2,184,421	-		PS417_10205	0.17	-1.2
2,184,526	+		PS417_10205	0.31	-0.0
2,184,528	+		PS417_10205	0.32	+0.3
2,184,529	-		PS417_10205	0.32	+0.2
2,184,529	-		PS417_10205	0.32	-0.2
2,184,534	+		PS417_10205	0.33	+0.2
2,184,639	+		PS417_10205	0.47	+0.0
2,184,735	+		PS417_10205	0.60	+0.3