Strain Fitness in Pseudomonas simiae WCS417 around PS417_08185

Experiment: Vogels_fungal_media; pH 5.5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Vogels_fungal_media; pH 5.5
1,791,526	+		PS417_08180	0.41	+0.2
1,791,541	+		PS417_08180	0.42	-0.1
1,791,541	+				-0.8
1,791,551	+		PS417_08180	0.43	+0.3
1,791,551	+		PS417_08180	0.43	+0.1
1,791,552	-		PS417_08180	0.43	+0.3
1,791,586	+		PS417_08180	0.46	-1.0
1,791,587	-		PS417_08180	0.46	+0.7
1,791,587	-		PS417_08180	0.46	-0.6
1,791,591	+		PS417_08180	0.46	+1.3
1,791,591	+		PS417_08180	0.46	+0.0
1,791,591	+		PS417_08180	0.46	+0.7
1,791,592	-		PS417_08180	0.46	-0.5
1,791,592	-		PS417_08180	0.46	+1.3
1,791,592	-		PS417_08180	0.46	+0.9
1,791,592	-		PS417_08180	0.46	+0.1
1,791,592	-		PS417_08180	0.46	+0.2
1,791,592	-		PS417_08180	0.46	-1.7
1,791,592	-		PS417_08180	0.46	+0.3
1,791,622	+		PS417_08180	0.49	+2.7
1,791,705	+		PS417_08180	0.55	+0.8
1,791,705	+		PS417_08180	0.55	-1.6
1,791,705	+				+0.4
1,791,705	+		PS417_08180	0.55	+0.2
1,791,984	+		PS417_08180	0.77	-0.2
1,791,998	-		PS417_08180	0.78	-1.1
1,792,113	+		PS417_08180	0.88	+0.0
1,792,122	+		PS417_08180	0.88	+0.8
1,792,123	-		PS417_08180	0.88	+0.0
1,792,123	-		PS417_08180	0.88	-0.2
1,792,183	+				-0.8
1,792,183	+				+0.7
1,792,184	-				+0.7
1,792,279	+				-0.3
1,792,279	+				-0.1
1,792,280	-				-1.0
1,792,307	-				-0.3
1,792,307	-				-0.7
1,792,356	+				+1.2
1,792,357	-				+0.1
1,792,395	+				-0.2
1,792,396	-				-0.4
1,792,396	-				-0.8
1,792,396	-				-0.6
1,792,445	-				-1.1
1,792,468	-				-1.7
1,792,586	-		PS417_08185	0.19	-2.0
1,792,682	+		PS417_08185	0.28	-1.1
1,792,808	-		PS417_08185	0.40	-2.1
1,792,808	-				-0.8
1,792,822	-		PS417_08185	0.42	-1.2
1,792,822	-		PS417_08185	0.42	-1.1
1,792,848	-		PS417_08185	0.44	-0.3
1,792,921	-				-1.0
1,792,921	-		PS417_08185	0.52	+0.1
1,792,921	-		PS417_08185	0.52	-1.2
1,792,991	-		PS417_08185	0.58	-1.3
1,793,132	-		PS417_08185	0.72	-2.6
1,793,159	-		PS417_08185	0.75	-0.1
1,793,191	-		PS417_08185	0.78	-1.1
1,793,355	-				-1.5
1,793,413	-				-1.1
1,793,413	-				-0.3
1,793,413	-				-0.7
1,793,413	-				-1.7
1,793,483	+				+1.1
1,793,507	+				+0.5
1,793,518	+				-1.7
1,793,518	+				+0.0
1,793,519	-				-1.1
1,793,656	+				-0.1
1,793,724	+		PS417_08190	0.11	-1.2
1,793,742	+		PS417_08190	0.12	-1.1
1,793,743	-		PS417_08190	0.12	-2.1
1,793,817	+		PS417_08190	0.15	-0.6
1,793,817	+		PS417_08190	0.15	-2.1
1,793,817	+		PS417_08190	0.15	+0.5
1,793,823	+		PS417_08190	0.16	-0.5
1,793,823	+		PS417_08190	0.16	-1.6
1,793,823	+		PS417_08190	0.16	-2.1
1,793,861	-		PS417_08190	0.18	-0.5
1,793,868	+		PS417_08190	0.18	-0.8
1,793,869	-		PS417_08190	0.18	-0.9
1,793,869	-		PS417_08190	0.18	-3.5
1,793,869	-		PS417_08190	0.18	-1.2
1,793,878	+				-0.7
1,793,878	+		PS417_08190	0.19	-1.3
1,793,999	+		PS417_08190	0.25	-1.0
1,794,003	+		PS417_08190	0.25	-1.0
1,794,003	+		PS417_08190	0.25	-2.0
1,794,077	+		PS417_08190	0.29	-1.4
1,794,129	+		PS417_08190	0.31	-2.1
1,794,129	+		PS417_08190	0.31	-0.9
1,794,143	+		PS417_08190	0.32	-1.6
1,794,259	+		PS417_08190	0.38	-2.5
1,794,259	+		PS417_08190	0.38	-1.2