Strain Fitness in Pseudomonas simiae WCS417 around PS417_08155

Experiment: Vogels_fungal_media; pH 5.5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Vogels_fungal_media; pH 5.5
1,786,097	+				-0.0
1,786,098	-				+0.1
1,786,099	+				+0.6
1,786,099	+				-0.6
1,786,100	-				-0.3
1,786,100	-				+0.3
1,786,100	-				-0.2
1,786,120	+				+0.3
1,786,121	-				-1.1
1,786,122	+				-0.1
1,786,123	-				+0.7
1,786,162	+				+0.7
1,786,185	-				-0.1
1,786,189	+				+1.8
1,786,189	+				-0.8
1,786,190	-				-0.6
1,786,348	-		PS417_08150	0.61	+0.2
1,786,396	-		PS417_08150	0.78	-0.6
1,786,396	-		PS417_08150	0.78	-1.3
1,786,426	+		PS417_08150	0.89	+0.1
1,786,451	+				+1.0
1,786,452	-				+0.3
1,786,472	+				+0.3
1,786,474	+				-0.9
1,786,474	+				-0.7
1,786,474	+				-0.1
1,786,474	+				+0.1
1,786,501	-				+2.2
1,786,540	+				+0.4
1,786,664	+		PS417_08155	0.25	+0.1
1,786,673	+		PS417_08155	0.28	-1.0
1,786,674	-		PS417_08155	0.28	-2.9
1,786,906	+				-0.2
1,786,938	+		PS417_08160	0.13	+0.0
1,786,939	-		PS417_08160	0.14	+0.8
1,786,939	-		PS417_08160	0.14	+0.6
1,787,055	+		PS417_08160	0.64	+0.2
1,787,142	+				+0.1
1,787,142	+				+0.2
1,787,143	-				+0.6
1,787,143	-				+0.8
1,787,143	-				-0.3
1,787,163	-				+0.2
1,787,167	+				+0.7
1,787,168	-				+0.4
1,787,191	+				+0.3
1,787,192	-				+0.4
1,787,192	-				+0.5
1,787,208	+				-0.1
1,787,208	+				+0.7
1,787,219	-				+0.5
1,787,219	-				+0.8
1,787,259	-				+0.3
1,787,263	+				-1.0
1,787,287	-				+0.5
1,787,435	-				+0.5
1,787,489	-				-1.3
1,787,489	-				-0.2
1,787,550	-				+0.7
1,787,607	+				-0.1
1,787,638	-				+0.6
1,787,638	-				+0.2
1,787,644	+				+0.7
1,787,644	+				+0.5
1,787,645	-				+0.8
1,787,645	-				+0.6
1,787,645	-				+0.1
1,787,645	-				+0.5
1,787,645	-				+0.5
1,787,645	-				+0.1
1,787,647	+				+0.4
1,787,647	+				+0.2
1,787,647	+				+0.8
1,787,647	+				+1.0
1,787,647	+				+0.3
1,787,647	+				+0.3
1,787,648	-				+0.7
1,787,648	-				+0.8
1,787,648	-				+0.6
1,787,648	-				+0.5
1,787,648	-				+0.2
1,787,648	-				-0.1
1,787,670	+				+0.4
1,787,731	+				+0.1
1,787,731	+				+0.4
1,787,816	+				+2.0
1,787,816	+		PS417_08165	0.16	-0.3
1,787,817	-		PS417_08165	0.16	+0.7
1,787,820	+		PS417_08165	0.17	-0.1
1,787,820	+		PS417_08165	0.17	-0.5
1,787,820	+		PS417_08165	0.17	-0.2
1,787,820	+		PS417_08165	0.17	+1.3
1,787,820	+		PS417_08165	0.17	-0.5
1,787,821	-		PS417_08165	0.17	+0.6
1,787,821	-		PS417_08165	0.17	+0.8
1,787,821	-		PS417_08165	0.17	+0.5
1,787,821	-		PS417_08165	0.17	+1.1