Strain Fitness in Pseudomonas simiae WCS417 around PS417_07945

Experiment: Vogels_fungal_media; pH 5.5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Vogels_fungal_media; pH 5.5
1,739,760	+				-0.6
1,739,763	-				-2.1
1,739,774	+				-0.4
1,739,779	-				+0.7
1,739,848	+				-0.4
1,739,884	-				-0.3
1,740,079	+				+1.0
1,740,079	+				-1.8
1,740,080	-				+0.2
1,740,082	+				+2.2
1,740,083	-				-0.5
1,740,083	-				-0.7
1,740,094	-				+0.4
1,740,125	+				-1.1
1,740,300	+				-0.2
1,740,300	+				+0.3
1,740,300	+				-2.0
1,740,300	+				+1.0
1,740,301	-				+0.2
1,740,301	-				+2.5
1,740,301	-				+0.3
1,740,380	+		PS417_07940	0.16	+0.3
1,740,380	+		PS417_07940	0.16	-0.5
1,740,390	-		PS417_07940	0.21	+0.2
1,740,591	+				-0.1
1,740,614	+				-0.4
1,740,614	+				-0.1
1,740,615	-				+1.3
1,740,626	+				-1.3
1,740,627	-				+0.3
1,740,669	+				+0.5
1,740,669	+				+2.4
1,740,669	+				-1.3
1,740,669	+				-0.9
1,740,669	+				-1.1
1,740,670	-				+0.6
1,740,670	-				-1.6
1,740,670	-				+0.3
1,740,849	+		PS417_07945	0.81	-0.6
1,740,850	-		PS417_07945	0.81	-0.7
1,740,850	-		PS417_07945	0.81	-1.2
1,740,909	+				-0.6
1,740,909	+				-0.3
1,740,909	+				-0.0
1,740,910	-				+0.1
1,740,910	-				+0.0
1,740,910	-				+1.0
1,740,913	+				+0.1
1,740,913	+				+0.0
1,740,914	-				+0.6
1,740,914	-				+0.5
1,740,914	-				-0.3
1,740,972	+				-0.3
1,741,032	-				-2.2
1,741,032	-				+0.2
1,741,071	-				+1.0
1,741,276	+		PS417_07950	0.23	-1.3
1,741,610	+		PS417_07950	0.52	+0.5
1,741,610	+		PS417_07950	0.52	-1.0
1,741,611	-		PS417_07950	0.52	+0.2