Strain Fitness in Pseudomonas simiae WCS417 around PS417_07905

Experiment: Vogels_fungal_media; pH 5.5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Vogels_fungal_media; pH 5.5
1,731,421	+				+0.8
1,731,422	-				+0.0
1,731,431	+				+1.0
1,731,432	-				+1.1
1,731,484	+				-0.4
1,731,485	-				+0.2
1,731,509	-				-0.3
1,731,587	+		PS417_07900	0.13	+0.1
1,731,660	-		PS417_07900	0.23	-1.5
1,731,660	-		PS417_07900	0.23	+0.4
1,731,691	-		PS417_07900	0.27	-0.3
1,731,694	+		PS417_07900	0.27	+0.4
1,731,903	-		PS417_07900	0.55	+0.0
1,731,903	-		PS417_07900	0.55	+0.2
1,731,903	-		PS417_07900	0.55	+1.6
1,731,903	-		PS417_07900	0.55	+0.7
1,731,903	-		PS417_07900	0.55	+0.3
1,731,904	+		PS417_07900	0.55	+0.2
1,731,978	-		PS417_07900	0.65	+0.3
1,731,995	-		PS417_07900	0.68	+1.0
1,732,091	+		PS417_07900	0.80	+0.7
1,732,091	+		PS417_07900	0.80	+0.9
1,732,091	+		PS417_07900	0.80	+0.2
1,732,092	-		PS417_07900	0.81	+0.1
1,732,092	-		PS417_07900	0.81	-1.0
1,732,135	-		PS417_07900	0.86	+0.4
1,732,184	-				+0.6
1,732,184	-				+1.3
1,732,230	-				+0.2
1,732,287	+				+0.2
1,732,288	-				+0.4
1,732,309	-				+0.9
1,732,343	+				-0.6
1,732,359	-				+0.5
1,732,420	-		PS417_07905	0.12	+1.8
1,732,508	+		PS417_07905	0.30	+0.3
1,732,555	+		PS417_07905	0.39	-0.8
1,732,618	+		PS417_07905	0.52	+2.0
1,732,618	+		PS417_07905	0.52	-2.3
1,732,618	+		PS417_07905	0.52	+0.4
1,732,618	+		PS417_07905	0.52	+0.0
1,732,618	+		PS417_07905	0.52	+0.4
1,732,619	-		PS417_07905	0.52	+0.6
1,732,619	-		PS417_07905	0.52	+0.2
1,732,622	+		PS417_07905	0.53	-1.3
1,732,622	+		PS417_07905	0.53	-1.0
1,732,690	-		PS417_07905	0.66	+0.4
1,732,690	-		PS417_07905	0.66	+0.2
1,732,747	+		PS417_07905	0.78	+0.2
1,732,747	+		PS417_07905	0.78	+1.1
1,732,747	+		PS417_07905	0.78	+0.1
1,732,748	-		PS417_07905	0.78	+0.2
1,732,748	-		PS417_07905	0.78	+0.3
1,732,748	-		PS417_07905	0.78	-0.1
1,732,808	+				-1.4
1,732,809	-				-0.1
1,732,915	-				-0.3
1,733,165	+				-0.1
1,733,165	+				-0.2
1,733,166	-				-0.3
1,733,333	-		PS417_07910	0.14	+0.2
1,733,402	+		PS417_07910	0.20	-1.5
1,733,402	+		PS417_07910	0.20	+0.1
1,733,403	-		PS417_07910	0.20	+1.2
1,733,403	-		PS417_07910	0.20	-0.0
1,733,403	-		PS417_07910	0.20	+0.1
1,733,412	+		PS417_07910	0.21	-1.8
1,733,412	+		PS417_07910	0.21	+0.2
1,733,412	+		PS417_07910	0.21	+1.3
1,733,413	-		PS417_07910	0.21	-0.7
1,733,517	+		PS417_07910	0.30	-0.4
1,733,518	-		PS417_07910	0.30	+1.9
1,733,518	-		PS417_07910	0.30	-0.4
1,733,558	+		PS417_07910	0.34	+0.4
1,733,558	+		PS417_07910	0.34	+2.3
1,733,559	-		PS417_07910	0.34	+0.2
1,733,559	-		PS417_07910	0.34	+1.8
1,733,559	-		PS417_07910	0.34	-0.4
1,733,580	+		PS417_07910	0.36	+0.5
1,733,606	+		PS417_07910	0.38	+0.2
1,733,606	+		PS417_07910	0.38	+0.0
1,733,610	+		PS417_07910	0.38	+0.5
1,733,612	+		PS417_07910	0.38	+0.4
1,733,612	+		PS417_07910	0.38	+1.0
1,733,612	+		PS417_07910	0.38	+1.2
1,733,613	-		PS417_07910	0.38	-0.1
1,733,739	+		PS417_07910	0.49	+1.6
1,733,740	-		PS417_07910	0.50	-0.2
1,733,740	-		PS417_07910	0.50	+1.0
1,733,760	+				-2.1
1,733,761	-		PS417_07910	0.51	-0.3
1,733,777	+		PS417_07910	0.53	+0.0
1,733,779	+		PS417_07910	0.53	+0.3
1,733,779	+		PS417_07910	0.53	-0.1
1,733,779	+				+1.0
1,733,780	-		PS417_07910	0.53	-0.0
1,733,780	-		PS417_07910	0.53	+1.0
1,733,780	-		PS417_07910	0.53	+0.3
1,733,780	-		PS417_07910	0.53	+0.2
1,733,780	-		PS417_07910	0.53	+0.0
1,733,780	-		PS417_07910	0.53	+0.1