Strain Fitness in Pseudomonas simiae WCS417 around PS417_06945

Experiment: Vogels_fungal_media; pH 5.5

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_06940 and PS417_06945 are separated by 0 nucleotidesPS417_06945 and PS417_06950 are separated by 68 nucleotides PS417_06940: PS417_06940 - MFS transporter permease, at 1,535,867 to 1,537,198 _06940 PS417_06945: PS417_06945 - membrane protein, at 1,537,199 to 1,537,687 _06945 PS417_06950: PS417_06950 - LysR family transcriptional regulator, at 1,537,756 to 1,538,682 _06950 Position (kb) 1537 1538Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1536.227 kb on + strand, within PS417_06940at 1536.228 kb on - strand, within PS417_06940at 1536.228 kb on - strand, within PS417_06940at 1536.284 kb on + strand, within PS417_06940at 1536.285 kb on - strand, within PS417_06940at 1536.288 kb on - strand, within PS417_06940at 1536.616 kb on + strand, within PS417_06940at 1536.647 kb on + strand, within PS417_06940at 1536.647 kb on + strand, within PS417_06940at 1536.647 kb on + strand, within PS417_06940at 1536.648 kb on - strand, within PS417_06940at 1536.648 kb on - strand, within PS417_06940at 1536.648 kb on - strand, within PS417_06940at 1536.672 kb on - strand, within PS417_06940at 1536.758 kb on + strand, within PS417_06940at 1536.758 kb on + strand, within PS417_06940at 1536.758 kb on + strand, within PS417_06940at 1536.758 kb on + strand, within PS417_06940at 1536.759 kb on - strand, within PS417_06940at 1536.759 kb on - strand, within PS417_06940at 1536.759 kb on - strand, within PS417_06940at 1536.808 kb on + strand, within PS417_06940at 1537.096 kb on + strandat 1537.112 kb on + strandat 1537.403 kb on - strand, within PS417_06945at 1537.484 kb on - strand, within PS417_06945at 1537.723 kb on + strandat 1538.090 kb on - strand, within PS417_06950at 1538.285 kb on - strand, within PS417_06950at 1538.344 kb on + strand, within PS417_06950at 1538.344 kb on + strand, within PS417_06950at 1538.345 kb on - strand, within PS417_06950at 1538.363 kb on + strand, within PS417_06950at 1538.363 kb on + strand, within PS417_06950at 1538.363 kb on + strand, within PS417_06950at 1538.363 kb on + strandat 1538.363 kb on + strand, within PS417_06950at 1538.363 kb on + strand, within PS417_06950at 1538.363 kb on + strand, within PS417_06950at 1538.364 kb on - strand, within PS417_06950at 1538.364 kb on - strand, within PS417_06950at 1538.364 kb on - strand, within PS417_06950at 1538.364 kb on - strand, within PS417_06950at 1538.364 kb on - strand, within PS417_06950at 1538.364 kb on - strand, within PS417_06950at 1538.465 kb on + strand, within PS417_06950at 1538.466 kb on - strand, within PS417_06950at 1538.660 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Vogels_fungal_media; pH 5.5
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1,536,227 + PS417_06940 0.27 -1.1
1,536,228 - PS417_06940 0.27 +0.7
1,536,228 - PS417_06940 0.27 +0.2
1,536,284 + PS417_06940 0.31 -0.6
1,536,285 - PS417_06940 0.31 +0.4
1,536,288 - PS417_06940 0.32 -1.0
1,536,616 + PS417_06940 0.56 +0.5
1,536,647 + PS417_06940 0.59 -0.1
1,536,647 + PS417_06940 0.59 -0.5
1,536,647 + PS417_06940 0.59 -0.0
1,536,648 - PS417_06940 0.59 +0.1
1,536,648 - PS417_06940 0.59 -0.1
1,536,648 - PS417_06940 0.59 -0.9
1,536,672 - PS417_06940 0.60 +0.0
1,536,758 + PS417_06940 0.67 +0.5
1,536,758 + PS417_06940 0.67 -1.3
1,536,758 + PS417_06940 0.67 -0.5
1,536,758 + PS417_06940 0.67 -0.1
1,536,759 - PS417_06940 0.67 +2.3
1,536,759 - PS417_06940 0.67 +0.4
1,536,759 - PS417_06940 0.67 -0.2
1,536,808 + PS417_06940 0.71 +0.3
1,537,096 + +3.3
1,537,112 + -0.0
1,537,403 - PS417_06945 0.42 -1.6
1,537,484 - PS417_06945 0.58 -0.4
1,537,723 + +0.0
1,538,090 - PS417_06950 0.36 -0.3
1,538,285 - PS417_06950 0.57 +0.1
1,538,344 + PS417_06950 0.63 -0.3
1,538,344 + PS417_06950 0.63 -0.2
1,538,345 - PS417_06950 0.64 +0.2
1,538,363 + PS417_06950 0.65 -0.2
1,538,363 + PS417_06950 0.65 -0.0
1,538,363 + PS417_06950 0.65 +0.0
1,538,363 + +0.1
1,538,363 + PS417_06950 0.65 -1.4
1,538,363 + PS417_06950 0.65 +0.2
1,538,363 + PS417_06950 0.65 +0.1
1,538,364 - PS417_06950 0.66 -0.3
1,538,364 - PS417_06950 0.66 +0.9
1,538,364 - PS417_06950 0.66 +0.4
1,538,364 - PS417_06950 0.66 -0.4
1,538,364 - PS417_06950 0.66 +0.1
1,538,364 - PS417_06950 0.66 +0.2
1,538,465 + PS417_06950 0.76 -0.2
1,538,466 - PS417_06950 0.77 +0.5
1,538,660 + -2.4

Or see this region's nucleotide sequence