Strain Fitness in Pseudomonas simiae WCS417 around PS417_06200

Experiment: Vogels_fungal_media; pH 5.5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Vogels_fungal_media; pH 5.5
1,373,847	-		PS417_06195	0.32	-0.0
1,373,932	-		PS417_06195	0.39	-0.0
1,374,072	-		PS417_06195	0.50	+1.7
1,374,236	+		PS417_06195	0.64	+0.6
1,374,237	-		PS417_06195	0.64	+0.6
1,374,275	+		PS417_06195	0.67	+0.6
1,374,275	+		PS417_06195	0.67	-0.9
1,374,276	-		PS417_06195	0.67	-0.4
1,374,276	-		PS417_06195	0.67	+0.0
1,374,276	-		PS417_06195	0.67	+0.2
1,374,285	-		PS417_06195	0.68	-0.2
1,374,644	-				+0.1
1,374,726	-				-0.2
1,374,726	-				-0.7
1,374,736	+				-0.9
1,374,812	-				+0.1
1,375,272	+		PS417_06200	0.17	+1.1
1,375,272	+		PS417_06200	0.17	-1.2
1,375,273	-		PS417_06200	0.17	+0.3
1,375,273	-		PS417_06200	0.17	-1.6
1,375,273	-		PS417_06200	0.17	-2.3
1,375,389	+		PS417_06200	0.21	-1.1
1,375,527	+		PS417_06200	0.26	+1.7
1,375,593	-		PS417_06200	0.29	-0.1
1,375,767	+		PS417_06200	0.35	-1.3
1,376,017	-		PS417_06200	0.44	-1.1
1,376,017	-		PS417_06200	0.44	-0.1
1,376,099	-		PS417_06200	0.48	-1.7
1,376,140	+		PS417_06200	0.49	-2.7
1,376,142	+		PS417_06200	0.49	-0.3
1,376,142	+		PS417_06200	0.49	-0.9
1,376,142	+		PS417_06200	0.49	-1.5
1,376,179	+		PS417_06200	0.50	-0.9
1,376,592	+		PS417_06200	0.66	-1.8
1,376,593	-				-0.9
1,376,593	-		PS417_06200	0.66	-0.7
1,376,721	+		PS417_06200	0.71	-1.5
1,377,535	+				+0.8
1,377,536	-				-0.6
1,377,539	+				-0.3
1,377,539	+				+0.6
1,377,540	-				-1.1
1,377,540	-				-1.1
1,377,586	+				+0.2
1,377,593	-				-0.4
1,377,620	+				-0.3
1,377,982	+		PS417_06205	0.50	-0.7
1,377,982	+		PS417_06205	0.50	-1.2
1,377,982	+		PS417_06205	0.50	-1.1
1,377,982	+		PS417_06205	0.50	+1.0
1,377,983	-		PS417_06205	0.50	-0.5
1,377,983	-		PS417_06205	0.50	+0.3
1,378,196	-		PS417_06205	0.77	-0.1
1,378,224	+		PS417_06205	0.80	-0.5
1,378,224	+		PS417_06205	0.80	-0.3
1,378,233	+		PS417_06205	0.81	-1.1
1,378,234	-		PS417_06205	0.81	-0.3
1,378,235	+		PS417_06205	0.82	-1.0
1,378,235	+		PS417_06205	0.82	-1.9
1,378,235	+		PS417_06205	0.82	-0.9
1,378,235	+		PS417_06205	0.82	+1.2
1,378,236	-		PS417_06205	0.82	+0.0
1,378,236	-		PS417_06205	0.82	-1.4
1,378,236	-		PS417_06205	0.82	-0.8
1,378,236	-		PS417_06205	0.82	-0.3
1,378,236	-		PS417_06205	0.82	-0.7
1,378,236	-		PS417_06205	0.82	+1.4
1,378,237	+		PS417_06205	0.82	-0.5
1,378,237	+		PS417_06205	0.82	+0.1
1,378,237	+		PS417_06205	0.82	-0.7
1,378,237	+		PS417_06205	0.82	-0.2
1,378,237	+		PS417_06205	0.82	-1.1
1,378,237	+		PS417_06205	0.82	+0.2
1,378,379	+				+0.3
1,378,379	+				+0.4
1,378,380	-				-0.6