Strain Fitness in Pseudomonas simiae WCS417 around PS417_05830

Experiment: Vogels_fungal_media; pH 5.5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Vogels_fungal_media; pH 5.5
1,297,005	+		PS417_05825	0.73	-0.3
1,297,006	-		PS417_05825	0.73	-0.7
1,297,006	-		PS417_05825	0.73	-1.6
1,297,006	-		PS417_05825	0.73	+1.8
1,297,493	+				-0.0
1,297,494	-				+0.3
1,297,494	-				+0.8
1,297,494	-				+0.2
1,297,508	-				-2.4
1,297,516	+				+1.1
1,297,516	+				-0.7
1,297,517	-				+0.6
1,297,517	-				+1.3
1,297,736	+		PS417_05830	0.34	-1.1
1,297,737	-		PS417_05830	0.34	-1.4
1,297,846	-		PS417_05830	0.59	-0.3
1,297,846	-		PS417_05830	0.59	-2.1
1,297,846	-		PS417_05830	0.59	-0.0
1,298,056	+				-1.3
1,298,056	+				-1.1
1,298,057	-				-0.3
1,298,095	+				-2.4
1,298,095	+				-4.1
1,298,097	+				-0.5
1,298,097	+				+0.3
1,298,097	+				-0.0
1,298,128	-				-1.7
1,298,321	-		PS417_05835	0.16	+0.1
1,298,521	+		PS417_05835	0.44	+0.2
1,298,521	+		PS417_05835	0.44	+0.3
1,298,521	+		PS417_05835	0.44	+0.2
1,298,521	+		PS417_05835	0.44	-0.2
1,298,521	+		PS417_05835	0.44	+0.7
1,298,522	-		PS417_05835	0.44	-0.2
1,298,522	-		PS417_05835	0.44	-0.5
1,298,522	-		PS417_05835	0.44	+1.2
1,298,528	+		PS417_05835	0.45	+1.7
1,298,529	-		PS417_05835	0.45	-0.2
1,298,529	-		PS417_05835	0.45	+0.6
1,298,659	+		PS417_05835	0.63	+0.2
1,298,660	-		PS417_05835	0.63	+0.4
1,298,818	+		PS417_05835	0.85	+0.1
1,298,828	+		PS417_05835	0.86	+0.4
1,298,828	+		PS417_05835	0.86	+0.3
1,298,828	+		PS417_05835	0.86	-0.2
1,298,828	+		PS417_05835	0.86	+0.3
1,298,828	+		PS417_05835	0.86	-0.5
1,298,829	-		PS417_05835	0.87	+0.3
1,298,829	-		PS417_05835	0.87	-0.1
1,298,829	-		PS417_05835	0.87	-1.8
1,298,843	-		PS417_05835	0.88	-0.4
1,298,843	-		PS417_05835	0.88	+0.1
1,298,843	-		PS417_05835	0.88	+0.4
1,298,908	+				-0.1
1,298,908	+				+0.5
1,298,908	+				-0.8
1,298,908	+				+0.6
1,298,910	+				-0.1
1,298,969	+				+0.1