Strain Fitness in Pseudomonas simiae WCS417 around PS417_04485

Experiment: Vogels_fungal_media; pH 5.5

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_04475 and PS417_04480 are separated by 57 nucleotidesPS417_04480 and PS417_04485 are separated by 182 nucleotidesPS417_04485 and PS417_04490 are separated by 150 nucleotides PS417_04475: PS417_04475 - hypothetical protein, at 991,354 to 991,941 _04475 PS417_04480: PS417_04480 - hypothetical protein, at 991,999 to 992,208 _04480 PS417_04485: PS417_04485 - hypothetical protein, at 992,391 to 992,648 _04485 PS417_04490: PS417_04490 - glycerol acyltransferase, at 992,799 to 993,962 _04490 Position (kb) 992 993Strain fitness (log2 ratio) -2 -1 0 1at 991.589 kb on + strand, within PS417_04475at 991.589 kb on + strand, within PS417_04475at 991.590 kb on - strand, within PS417_04475at 991.702 kb on + strand, within PS417_04475at 991.703 kb on - strand, within PS417_04475at 991.726 kb on + strand, within PS417_04475at 991.726 kb on + strand, within PS417_04475at 991.726 kb on + strand, within PS417_04475at 991.727 kb on - strand, within PS417_04475at 992.096 kb on + strand, within PS417_04480at 992.178 kb on - strand, within PS417_04480at 992.219 kb on + strandat 992.249 kb on + strandat 992.278 kb on + strandat 992.286 kb on - strandat 992.286 kb on - strandat 992.291 kb on - strandat 992.316 kb on + strandat 992.335 kb on - strandat 992.377 kb on + strandat 992.378 kb on - strandat 992.429 kb on - strand, within PS417_04485at 992.429 kb on - strand, within PS417_04485at 992.431 kb on + strand, within PS417_04485at 992.431 kb on + strand, within PS417_04485at 992.432 kb on - strand, within PS417_04485at 992.432 kb on - strand, within PS417_04485at 992.432 kb on - strand, within PS417_04485at 992.554 kb on + strand, within PS417_04485at 992.555 kb on - strand, within PS417_04485at 992.555 kb on - strand, within PS417_04485at 992.726 kb on + strandat 992.727 kb on - strandat 992.800 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Vogels_fungal_media; pH 5.5
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991,589 + PS417_04475 0.40 -0.3
991,589 + PS417_04475 0.40 -1.0
991,590 - PS417_04475 0.40 -0.5
991,702 + PS417_04475 0.59 -0.6
991,703 - PS417_04475 0.59 -1.9
991,726 + PS417_04475 0.63 -1.1
991,726 + PS417_04475 0.63 +0.7
991,726 + PS417_04475 0.63 +0.5
991,727 - PS417_04475 0.63 -0.5
992,096 + PS417_04480 0.46 -0.0
992,178 - PS417_04480 0.85 +0.3
992,219 + -0.0
992,249 + -0.3
992,278 + +0.9
992,286 - -0.2
992,286 - +0.4
992,291 - -0.0
992,316 + +0.3
992,335 - +0.0
992,377 + +0.3
992,378 - +0.2
992,429 - PS417_04485 0.15 -0.0
992,429 - PS417_04485 0.15 +0.8
992,431 + PS417_04485 0.16 +0.7
992,431 + PS417_04485 0.16 -0.5
992,432 - PS417_04485 0.16 +0.9
992,432 - PS417_04485 0.16 +0.3
992,432 - PS417_04485 0.16 -0.4
992,554 + PS417_04485 0.63 +1.2
992,555 - PS417_04485 0.64 -0.3
992,555 - PS417_04485 0.64 +0.4
992,726 + -0.8
992,727 - +0.3
992,800 + -0.5

Or see this region's nucleotide sequence